Fritzsch, Guido; Schlegel, Martin; Stadler, Peter F. Alignments of mitochondrial genome arrangements: applications to metazoan phylogeny. (English) Zbl 1447.92281 J. Theor. Biol. 240, No. 4, 511-520 (2006). MSC: 92D15 92D10 92C37 PDFBibTeX XMLCite \textit{G. Fritzsch} et al., J. Theor. Biol. 240, No. 4, 511--520 (2006; Zbl 1447.92281) Full Text: DOI Link
Seligmann, Hervé; Krishnan, Neeraja M.; Rao, Basuthkar J. Possible multiple origins of replication in primate mitochondria: alternative role of tRNA sequences. (English) Zbl 1447.92294 J. Theor. Biol. 241, No. 2, 321-332 (2006). MSC: 92D15 92-05 PDFBibTeX XMLCite \textit{H. Seligmann} et al., J. Theor. Biol. 241, No. 2, 321--332 (2006; Zbl 1447.92294) Full Text: DOI
Bohl, Erich; Lancaster, Peter Implementation of a Markov model for phylogenetic trees. (English) Zbl 1445.92188 J. Theor. Biol. 239, No. 3, 324-333 (2006). MSC: 92D15 60J20 PDFBibTeX XMLCite \textit{E. Bohl} and \textit{P. Lancaster}, J. Theor. Biol. 239, No. 3, 324--333 (2006; Zbl 1445.92188) Full Text: DOI
Willson, Stephen J. Unique reconstruction of tree-like phylogenetic networks from distances between leaves. (English) Zbl 1296.92175 Bull. Math. Biol. 68, No. 4, 919-944 (2006). MSC: 92D10 92D15 PDFBibTeX XMLCite \textit{S. J. Willson}, Bull. Math. Biol. 68, No. 4, 919--944 (2006; Zbl 1296.92175) Full Text: DOI
Bouligand, Yves Symmetry breaking in the gradual context of ontogeny and phylogeny. (Les brisures de symétrie dans le contexte gradualiste de l’ontogénie et de la phylogénie.) (French. English summary) Zbl 1398.92166 Boi, Luciano (ed.), Symétries, brisures de symétries et complexité en mathématiques, physique et biologie. Essais de philosophie naturelle. Bern: Peter Lang (ISBN 3-03910-762-3/pbk). Philosophia Naturalis et Geometricalis 5, 249-294 (2006). MSC: 92D15 PDFBibTeX XMLCite \textit{Y. Bouligand}, Philos. Nat. Geom. 5, 249--294 (2006; Zbl 1398.92166)
Wu, Gang; You, Jia-Huai; Lin, Guohui A polynomial time algorithm for the minimum quartet inconsistency problem with \(O(n)\) quartet errors. (English) Zbl 1185.68837 Inf. Process. Lett. 100, No. 4, 167-171 (2006). MSC: 68W05 PDFBibTeX XMLCite \textit{G. Wu} et al., Inf. Process. Lett. 100, No. 4, 167--171 (2006; Zbl 1185.68837) Full Text: DOI
Baroni, Mihaela Carmen Hybrid phylogenies with certain properties of regularity. (English) Zbl 1174.05324 Stud. Cercet. Ştiinţ., Ser. Mat., Univ. Bacău 16, Suppl., 57-66 (2006). MSC: 05C05 92C40 92D15 PDFBibTeX XMLCite \textit{M. C. Baroni}, Stud. Cercet. Științ., Ser. Mat., Univ. Bacău 16, 57--66 (2006; Zbl 1174.05324)
Asano, T.; Rosselló, F.; Valiente, G. Efficient computation of template matrices. (English) Zbl 1379.65021 Martínez Moro, Edgar (ed.), V jornadas de matemática discreta y algorítmica. Valladolid: Universidade de Valladolid, Secretariado de Publicaciones e Intercambio Editorial (ISBN 978-84-8448-380-9/pbk). Ciencias (Valladolid) 23, 79-86 (2006). MSC: 65F30 92D15 PDFBibTeX XMLCite \textit{T. Asano} et al., in: V jornadas de matemática discreta y algorítmica. Valladolid: Universidade de Valladolid, Secretariado de Publicaciones e Intercambio Editorial. 79--86 (2006; Zbl 1379.65021) Full Text: Link
Kavanagh, Jonathan; Mitchell, David; Ternovska, Eugenia; Maňuch, Ján; Zhao, Xiaohong; Gupta, Arvind Constructing Camin-Sokal phylogenies via answer set programming. (English) Zbl 1165.92318 Hermann, Miki (ed.) et al., Logic for programming, artificial intelligence, and reasoning. 13th international conference, LPAR 2006, Phnom Penh, Cambodia, November 13–17, 2006. Proceedings. Berlin: Springer (ISBN 978-3-540-48281-9/pbk). Lecture Notes in Computer Science 4246. Lecture Notes in Artificial Intelligence, 452-466 (2006). MSC: 92D15 68N17 PDFBibTeX XMLCite \textit{J. Kavanagh} et al., Lect. Notes Comput. Sci. 4246, 452--466 (2006; Zbl 1165.92318) Full Text: DOI Link
Dasgupta, Bhaskar; Ferrarini, Sergio; Gopalakrishnan, Uthra; Paryani, Nisha Raj Inapproximability results for the lateral gene transfer problem. (English) Zbl 1135.92025 J. Comb. Optim. 11, No. 4, 387-405 (2006). MSC: 92D15 92D10 90C27 90C90 65Y20 PDFBibTeX XMLCite \textit{B. Dasgupta} et al., J. Comb. Optim. 11, No. 4, 387--405 (2006; Zbl 1135.92025) Full Text: DOI
Csűrös, Miklós; Miklós, István A probabilistic model for gene content evolution with duplication, loss, and horizontal transfer. (English) Zbl 1302.92087 Apostolico, Alberto (ed.) et al., Research in computational molecular biology. 10th annual international conference, RECOMB 2006, Venice, Italy, April 2–5, 2006, Proceedings. Berlin: Springer (ISBN 978-3-540-33295-4/pbk). Lecture Notes in Computer Science 3909. Lecture Notes in Bioinformatics, 206-220 (2006). MSC: 92D15 92D10 60J20 PDFBibTeX XMLCite \textit{M. Csűrös} and \textit{I. Miklós}, Lect. Notes Comput. Sci. 3909, 206--220 (2006; Zbl 1302.92087) Full Text: DOI arXiv
Mossel, Elchanan; Vigoda, Eric Limitations of Markov chain Monte Carlo algorithms for Bayesian inference of phylogeny. (English) Zbl 1121.60078 Ann. Appl. Probab. 16, No. 4, 2215-2234 (2006). MSC: 60J10 92D15 PDFBibTeX XMLCite \textit{E. Mossel} and \textit{E. Vigoda}, Ann. Appl. Probab. 16, No. 4, 2215--2234 (2006; Zbl 1121.60078) Full Text: DOI arXiv
Kennedy, William; Lin, Guohui; Yan, Guiying Strictly chordal graphs are leaf powers. (English) Zbl 1108.92031 J. Discrete Algorithms 4, No. 4, 511-525 (2006). MSC: 92D15 05C90 92-08 PDFBibTeX XMLCite \textit{W. Kennedy} et al., J. Discrete Algorithms 4, No. 4, 511--525 (2006; Zbl 1108.92031) Full Text: DOI
Steel, M. A.; Székely, L. A. On the variational distance of two trees. (English) Zbl 1111.62111 Ann. Appl. Probab. 16, No. 3, 1563-1575 (2006). MSC: 62P10 05C05 92D15 05C80 05C90 PDFBibTeX XMLCite \textit{M. A. Steel} and \textit{L. A. Székely}, Ann. Appl. Probab. 16, No. 3, 1563--1575 (2006; Zbl 1111.62111) Full Text: DOI arXiv
Tsukiji, Tatsuie; Chen, Zhi-Zhong Computing phylogenetic roots with bounded degrees and errors is NP-complete. (English) Zbl 1153.68383 Theor. Comput. Sci. 363, No. 1, 43-59 (2006). MSC: 68Q17 05C05 05C69 68R10 92D15 PDFBibTeX XMLCite \textit{T. Tsukiji} and \textit{Z.-Z. Chen}, Theor. Comput. Sci. 363, No. 1, 43--59 (2006; Zbl 1153.68383) Full Text: DOI
Dinu, Liviu P.; Sgarro, Andrea A low-complexity distance for DNA strings. (English) Zbl 1119.92316 Fundam. Inform. 73, No. 3, 361-372 (2006). MSC: 92C40 92-08 92D20 PDFBibTeX XMLCite \textit{L. P. Dinu} and \textit{A. Sgarro}, Fundam. Inform. 73, No. 3, 361--372 (2006; Zbl 1119.92316)
Haubold, Bernhard; Wiehe, Thomas Introduction to computational biology. An evolutionary approach. With CD-ROM. (English) Zbl 1117.92027 Basel: Birkhäuser (ISBN 3-7643-6700-8/hbk). xiv, 328 p. (2006). Reviewer: W. Werft (Heidelberg) MSC: 92C40 92D15 92-02 90C90 92-08 90C39 92B05 92D20 92D10 PDFBibTeX XMLCite \textit{B. Haubold} and \textit{T. Wiehe}, Introduction to computational biology. An evolutionary approach. With CD-ROM. Basel: Birkhäuser (2006; Zbl 1117.92027)
Zhao, Yongqiang; He, Wenjie Note on competition and phylogeny numbers. (English) Zbl 1102.05018 Australas. J. Comb. 34, 239-246 (2006). Reviewer: Wai-Kai Chen (Fremont) MSC: 05C05 05C20 92D15 PDFBibTeX XMLCite \textit{Y. Zhao} and \textit{W. He}, Australas. J. Comb. 34, 239--246 (2006; Zbl 1102.05018)
Hartke, Stephen G. The elimination procedure for the competition number is not optimal. (English) Zbl 1100.05045 Discrete Appl. Math. 154, No. 11, 1633-1639 (2006). Reviewer: Haiko Müller (Leeds) MSC: 05C20 68R10 PDFBibTeX XMLCite \textit{S. G. Hartke}, Discrete Appl. Math. 154, No. 11, 1633--1639 (2006; Zbl 1100.05045) Full Text: DOI
Chen, Zhi-Zhong; Tsukiji, Tatsuie Computing bounded-degree phylogenetic roots of disconnected graphs. (English) Zbl 1103.68089 J. Algorithms 59, No. 2, 125-148 (2006). MSC: 68R10 05C85 92D15 PDFBibTeX XMLCite \textit{Z.-Z. Chen} and \textit{T. Tsukiji}, J. Algorithms 59, No. 2, 125--148 (2006; Zbl 1103.68089) Full Text: DOI
Wang, Li-San; Warnow, Tandy Reconstructing chromosomal evolution. (English) Zbl 1107.92035 SIAM J. Comput. 36, No. 1, 99-131 (2006). MSC: 92D15 05C90 05E25 60J20 PDFBibTeX XMLCite \textit{L.-S. Wang} and \textit{T. Warnow}, SIAM J. Comput. 36, No. 1, 99--131 (2006; Zbl 1107.92035) Full Text: DOI
Damaschke, Peter Parameterized enumeration, transversals, and imperfect phylogeny reconstruction. (English) Zbl 1087.68067 Theor. Comput. Sci. 351, No. 3, 337-350 (2006). MSC: 68R10 92D15 PDFBibTeX XMLCite \textit{P. Damaschke}, Theor. Comput. Sci. 351, No. 3, 337--350 (2006; Zbl 1087.68067) Full Text: DOI