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Found 237 Documents (Results 1–100)

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Le, Thien; Sy, Aaron; Molloy, Erin K.; Zhang, Qiuyi (Richard); Rao, Satish; Warnow, Tandy
Using INC within divide-and-conquer phylogeny estimation. (English) Zbl 1416.92125
Holmes, Ian (ed.) et al., Algorithms for computational biology. 6th international conference, AlCoB 2019, Berkeley, CA, USA, May 28–30, 2019. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11488, 167-178 (2019).
MSC:  92D15
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\textit{T. Le} et al., Lect. Notes Comput. Sci. 11488, 167--178 (2019; Zbl 1416.92125)
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Gunawan, Andreas D. M.
Solving the tree containment problem for reticulation-visible networks in linear time. (English) Zbl 1392.92060
Jansson, Jesper (ed.) et al., Algorithms for computational biology. 5th international conference, ALCoB 2018, Hong Kong, China, June 25–26, 2018. Proceedings. Cham: Springer (ISBN 978-3-319-91937-9/pbk; 978-3-319-91938-6/ebook). Lecture Notes in Computer Science 10849. Lecture Notes in Bioinformatics, 24-36 (2018).
MSC:  92D15 68Q25
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\textit{A. D. M. Gunawan}, Lect. Notes Comput. Sci. 10849, 24--36 (2018; Zbl 1392.92060)
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El-Mabrouk, Nadia; Ouangraoua, Aïda
A general framework for gene tree correction based on duplication-loss reconciliation. (English) Zbl 1443.92128
Schwartz, Russell (ed.) et al., 17th international workshop on algorithms in bioinformatics, WABI 2017, Boston, MA, USA, August 21–23, 2017. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 88, Article 8, 14 p. (2017).
MSC:  92D15 92D10
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\textit{N. El-Mabrouk} and \textit{A. Ouangraoua}, LIPIcs -- Leibniz Int. Proc. Inform. 88, Article 8, 14 p. (2017; Zbl 1443.92128)
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Lafond, Manuel; Noutahi, Emmanuel; El-Mabrouk, Nadia
Efficient non-binary gene tree resolution with weighted reconciliation cost. (English) Zbl 1380.68484
Grossi, Roberto (ed.) et al., 27th annual symposium on combinatorial pattern matching, CPM 2016, Tel Aviv, Israel, June 27–29, 2016. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-95977-012-5). LIPIcs – Leibniz International Proceedings in Informatics 54, Article 14, 12 p. (2016).
MSC:  68W40 92D10 92D15
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\textit{M. Lafond} et al., LIPIcs -- Leibniz Int. Proc. Inform. 54, Article 14, 12 p. (2016; Zbl 1380.68484)
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Ando, Kazutoshi; Sato, Koki
An algorithm for finding a representation of a subtree distance. (English) Zbl 1451.05064
Cerulli, Raffaele (ed.) et al., Combinatorial optimization. 4th international symposium, ISCO 2016, Vietri sul Mare, Italy, May 16–18, 2016. Revised selected papers. Cham: Springer. Lect. Notes Comput. Sci. 9849, 249-259 (2016).
MSC:  05C12 05C05 05C85 68W40 92D15
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\textit{K. Ando} and \textit{K. Sato}, Lect. Notes Comput. Sci. 9849, 249--259 (2016; Zbl 1451.05064)
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Steel, Mike
Phylogeny. Discrete and random processes in evolution. (English) Zbl 1361.92001
CBMS-NSF Regional Conference Series in Applied Mathematics 89. Philadelphia, PA: Society for Industrial and Applied Mathematics (SIAM) (ISBN 978-1-61197-447-8/pbk; 978-1-61197-448-5/ebook). xvi, 293 p. (2016).
Reviewer: Fatima T. Adylova (Tashkent)
MSC:  92-01 92D15 92C37 92C80
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\textit{M. Steel}, Phylogeny. Discrete and random processes in evolution. Philadelphia, PA: Society for Industrial and Applied Mathematics (SIAM) (2016; Zbl 1361.92001)
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Drinkwater, Benjamin; Charleston, Michael A.
A sub-quadratic time and space complexity solution for the dated tree reconciliation problem for select tree topologies. (English) Zbl 1367.92081
Pop, Mihai (ed.) et al., Algorithms in bioinformatics. 15th international workshop, WABI 2015, Atlanta, GA, USA, September 10–12, 2015. Proceedings. Berlin: Springer (ISBN 978-3-662-48220-9/pbk; 978-3-662-48221-6/ebook). Lecture Notes in Computer Science 9289. Lecture Notes in Bioinformatics, 93-107 (2015).
MSC:  92D15 92-08 68Q17 68Q25
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\textit{B. Drinkwater} and \textit{M. A. Charleston}, Lect. Notes Comput. Sci. 9289, 93--107 (2015; Zbl 1367.92081)
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Hujdurović, Ademir; Kačar, Urša; Milanič, Martin; Ries, Bernard; Tomescu, Alexandru I.
Finding a perfect phylogeny from mixed tumor samples. (English) Zbl 1367.92083
Pop, Mihai (ed.) et al., Algorithms in bioinformatics. 15th international workshop, WABI 2015, Atlanta, GA, USA, September 10–12, 2015. Proceedings. Berlin: Springer (ISBN 978-3-662-48220-9/pbk; 978-3-662-48221-6/ebook). Lecture Notes in Computer Science 9289. Lecture Notes in Bioinformatics, 80-92 (2015).
MSC:  92D15 92-08 68Q17
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\textit{A. Hujdurović} et al., Lect. Notes Comput. Sci. 9289, 80--92 (2015; Zbl 1367.92083)
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Heath, Tracy A.; Moore, Brian R.
Bayesian inference of species divergence times. (English) Zbl 1419.92020
Chen, Ming-Hui (ed.) et al., Bayesian phylogenetics. Methods, algorithms, and applications. Boca Raton, FL: CRC Press. Chapman Hall/CRC Math. Comput. Biol. Ser., 277-318 (2014).
MSC:  92D15 62P10 62F15
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\textit{T. A. Heath} and \textit{B. R. Moore}, in: Bayesian phylogenetics. Methods, algorithms, and applications. Boca Raton, FL: CRC Press. 277--318 (2014; Zbl 1419.92020)
Hajirasouliha, Iman; Raphael, Benjamin J.
Reconstructing mutational history in multiply sampled tumors using perfect phylogeny mixtures. (English) Zbl 1367.92082
Brown, Dan (ed.) et al., Algorithms in bioinformatics. 14th international workshop, WABI 2014, Wroclaw, Poland, September 8–10, 2014. Proceedings. Berlin: Springer (ISBN 978-3-662-44752-9/pbk). Lecture Notes in Computer Science 8701. Lecture Notes in Bioinformatics, 354-367 (2014).
MSC:  92D15 92D10 92-08 05C15 68Q17
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\textit{I. Hajirasouliha} and \textit{B. J. Raphael}, Lect. Notes Comput. Sci. 8701, 354--367 (2014; Zbl 1367.92082)
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Gorodkin, Jan (ed.); Ruzzo, Walter L. (ed.)
RNA sequence, structure, and function: computational and bioinformatic methods. (English) Zbl 1307.92008
Methods in Molecular Biology 1097. New York, NY: Humana Press/Springer (ISBN 978-1-62703-708-2/hbk; 978-1-62703-709-9/ebook). xi, 533 p. (2014).
Reviewer: Irina Ioana Mohorianu (Norwich)
MSC:  92-06 92D10 92D20 92B99
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\textit{J. Gorodkin} (ed.) and \textit{W. L. Ruzzo} (ed.), RNA sequence, structure, and function: computational and bioinformatic methods. New York, NY: Humana Press/Springer (2014; Zbl 1307.92008)
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Boden, Marcus; Schöneich, Martin; Horwege, Sebastian; Lindner, Sebastian; Leimeister, Chris; Morgenstern, Burkhard
Alignment-free sequence comparison with spaced \(k\)-mers. (English) Zbl 1281.92004
Beißbarth, Tim (ed.) et al., German conference on bioinformatics 2013, GCB’13, Göttingen, Germany, September 10–13, 2013. Selected papers based on the presentations at the conference. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-939897-59-0). OASIcs – OpenAccess Series in Informatics 34, 24-34, electronic only (2013).
MSC:  92B05 92D10 68W32
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\textit{M. Boden} et al., OASIcs -- OpenAccess Ser. Inform. 34, 24--34 (2013; Zbl 1281.92004)
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Chen, Kun-Tze; Li, Chi-Long; Yang, Chung-Han; Lu, Chin Lung
An efficient algorithm for one-sided block ordering problem with block-interchange distance. (English) Zbl 1382.92189
Du, Ding-Zhu (ed.) et al., Computing and combinatorics. 19th international conference, COCOON 2013, Hangzhou, China, June 21–23, 2013. Proceedings. Berlin: Springer (ISBN 978-3-642-38767-8/pbk). Lecture Notes in Computer Science 7936, 409-420 (2013).
MSC:  92D10 68W40 92D15
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\textit{K.-T. Chen} et al., Lect. Notes Comput. Sci. 7936, 409--420 (2013; Zbl 1382.92189)
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Chairungsee, Supaporn; Crochemore, Maxime
Building phylogeny with minimal absent words. (English) Zbl 1297.68277
Bouchou-Markhoff, Béatrice (ed.) et al., Implementation and application of automata. 16th international conference, CIAA 2011, Blois, France, July 13–16, 2011. Proceedings. Berlin: Springer (ISBN 978-3-642-22255-9/pbk). Lecture Notes in Computer Science 6807, 100-109 (2011).
MSC:  68W32 68P05 92D20
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\textit{S. Chairungsee} and \textit{M. Crochemore}, Lect. Notes Comput. Sci. 6807, 100--109 (2011; Zbl 1297.68277)
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Brown, Daniel G.; Truszkowski, Jakub
Fast error-tolerant quartet phylogeny algorithms. (English) Zbl 1339.92057
Giancarlo, Raffaele (ed.) et al., Combinatorial pattern matching. 22nd annual symposium, CPM 2011, Palermo, Italy, June 27–29, 2011. Proceedings. Berlin: Springer (ISBN 978-3-642-21457-8/pbk). Lecture Notes in Computer Science 6661, 147-161 (2011).
MSC:  92D15 92-08
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\textit{D. G. Brown} and \textit{J. Truszkowski}, Lect. Notes Comput. Sci. 6661, 147--161 (2011; Zbl 1339.92057)
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Baroni, Mihaela Carmen
Modelling reticulate evolution. (English) Zbl 1212.05252
Beznea, Lucian (ed.) et al., Proceedings of the sixth congress of Romanian Mathematicians, Bucharest, Romania, June 28–July 4, 2007. Vol. 1: Scientific contributions. Bucharest: Editura Academiei Române (ISBN 978-973-27-1781-3/v.1; 978-973-27-1780-6/set). 551-555 (2009).
MSC:  05C90 05C05 05C20 92D15
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\textit{M. C. Baroni}, in: Proceedings of the sixth congress of Romanian Mathematicians, Bucharest, Romania, June 28--July 4, 2007. Vol. 1: Scientific contributions. Bucharest: Editura Academiei Române. 551--555 (2009; Zbl 1212.05252)
Rossi, Ryan Anthony
Latent semantic analysis of the languages of life. (English) Zbl 1187.68199
Cai, Zhihua (ed.) et al., Computational intelligence and intelligent systems. 4th international symposium on intelligence computation and applications, ISICA 2009, Huangshi, China, October 23–25, 2009. Proceedings. Berlin: Springer (ISBN 978-3-642-04961-3/pbk; 978-3-642-04962-0/ebook). Communications in Computer and Information Science 51, 128-137 (2009).
MSC:  68P20 68T50 68U99
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\textit{R. A. Rossi}, Commun. Comput. Inf. Sci. 51, 128--137 (2009; Zbl 1187.68199)
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