Disanto, Filippo; Fuchs, Michael; Huang, Chun-Yen; Paningbatan, Ariel R.; Rosenberg, Noah A. The distributions under two species-tree models of the total number of ancestral configurations for matching gene trees and species trees. (English) Zbl 1526.92037 Adv. Appl. Math. 152, Article ID 102594, 37 p. (2024). MSC: 92D15 05A15 05A16 PDFBibTeX XMLCite \textit{F. Disanto} et al., Adv. Appl. Math. 152, Article ID 102594, 37 p. (2024; Zbl 1526.92037) Full Text: DOI arXiv
Stevenson, Joshua; Terauds, Venta; Sumner, Jeremy Rearrangement events on circular genomes. (English) Zbl 1526.92043 Bull. Math. Biol. 85, No. 11, Paper No. 107, 27 p. (2023). MSC: 92D15 92D10 PDFBibTeX XMLCite \textit{J. Stevenson} et al., Bull. Math. Biol. 85, No. 11, Paper No. 107, 27 p. (2023; Zbl 1526.92043) Full Text: DOI arXiv OA License
Legried, Brandon; Terhorst, Jonathan Identifiability and inference of phylogenetic birth-death models. (English) Zbl 1518.92096 J. Theor. Biol. 568, Article ID 111520, 9 p. (2023). MSC: 92D15 60J85 PDFBibTeX XMLCite \textit{B. Legried} and \textit{J. Terhorst}, J. Theor. Biol. 568, Article ID 111520, 9 p. (2023; Zbl 1518.92096) Full Text: DOI
Huber, K. T.; Maher, L. J. Autopolyploidy, allopolyploidy, and phylogenetic networks with horizontal arcs. (English) Zbl 1514.92072 Bull. Math. Biol. 85, No. 5, Paper No. 40, 26 p. (2023). MSC: 92D15 PDFBibTeX XMLCite \textit{K. T. Huber} and \textit{L. J. Maher}, Bull. Math. Biol. 85, No. 5, Paper No. 40, 26 p. (2023; Zbl 1514.92072) Full Text: DOI arXiv
Stevenson, Joshua; Holland, Barbara; Charleston, Michael; Sumner, Jeremy Evaluation of the relative performance of the subflattenings method for phylogenetic inference. (English) Zbl 1508.92178 Bull. Math. Biol. 85, No. 3, Paper No. 19, 23 p. (2023). MSC: 92D15 05C90 PDFBibTeX XMLCite \textit{J. Stevenson} et al., Bull. Math. Biol. 85, No. 3, Paper No. 19, 23 p. (2023; Zbl 1508.92178) Full Text: DOI arXiv
Allman, Elizabeth S.; Baños, Hector; Mitchell, Jonathan D.; Rhodes, John A. The tree of blobs of a species network: identifiability under the coalescent. (English) Zbl 1505.92135 J. Math. Biol. 86, No. 1, Paper No. 10, 26 p. (2023). MSC: 92D15 93C42 PDFBibTeX XMLCite \textit{E. S. Allman} et al., J. Math. Biol. 86, No. 1, Paper No. 10, 26 p. (2023; Zbl 1505.92135) Full Text: DOI arXiv
Hassler, Gabriel; Tolkoff, Max R.; Allen, William L.; Ho, Lam Si Tung; Lemey, Philippe; Suchard, Marc A. Inferring phenotypic trait evolution on large trees with many incomplete measurements. (English) Zbl 1507.62221 J. Am. Stat. Assoc. 117, No. 538, 678-692 (2022). MSC: 62D10 62F15 62P10 PDFBibTeX XMLCite \textit{G. Hassler} et al., J. Am. Stat. Assoc. 117, No. 538, 678--692 (2022; Zbl 1507.62221) Full Text: DOI arXiv
Hill, Max; Legried, Brandon; Roch, Sebastien Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods. (English) Zbl 1505.92139 Ann. Appl. Probab. 32, No. 6, 4681-4705 (2022). MSC: 92D15 60J90 60J85 PDFBibTeX XMLCite \textit{M. Hill} et al., Ann. Appl. Probab. 32, No. 6, 4681--4705 (2022; Zbl 1505.92139) Full Text: DOI arXiv
Disanto, Filippo; Fuchs, Michael; Paningbatan, Ariel R.; Rosenberg, Noah A. The distributions under two species-tree models of the number of root ancestral configurations for matching gene trees and species trees. (English) Zbl 1505.92137 Ann. Appl. Probab. 32, No. 6, 4426-4458 (2022). MSC: 92D15 05A15 PDFBibTeX XMLCite \textit{F. Disanto} et al., Ann. Appl. Probab. 32, No. 6, 4426--4458 (2022; Zbl 1505.92137) Full Text: DOI arXiv
Goh, Gary; Fuchs, Michael; Zhang, Louxin Two results about the Sackin and Colless indices for phylogenetic trees and their shapes. (English) Zbl 1511.92046 J. Math. Biol. 85, No. 6-7, Paper No. 69, 15 p. (2022). Reviewer: Krzysztof Bartoszek (Linköping) MSC: 92D15 05A16 05C90 PDFBibTeX XMLCite \textit{G. Goh} et al., J. Math. Biol. 85, No. 6--7, Paper No. 69, 15 p. (2022; Zbl 1511.92046) Full Text: DOI arXiv
Hill, Max; Roch, Sebastien On the effect of intralocus recombination on triplet-based species tree estimation. (English) Zbl 1496.92059 Pe’er, Itsik (ed.), Research in computational molecular biology. 26th annual international conference, RECOMB 2022, San Diego, CA, USA, May 22–25, 2022. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13278, 143-158 (2022). MSC: 92D15 PDFBibTeX XMLCite \textit{M. Hill} and \textit{S. Roch}, Lect. Notes Comput. Sci. 13278, 143--158 (2022; Zbl 1496.92059) Full Text: DOI
Jiang, Yueyu; Tabaghi, Puoya; Mirarab, Siavash Phylogenetic placement problem: a hyperbolic embedding approach. (English) Zbl 1494.92079 Jin, Lingling (ed.) et al., Comparative genomics. 19th international conference, RECOMB-CG 2022, La Jolla, CA, USA, May 20–21, 2022. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 13234, 68-85 (2022). MSC: 92D15 68T07 PDFBibTeX XMLCite \textit{Y. Jiang} et al., Lect. Notes Comput. Sci. 13234, 68--85 (2022; Zbl 1494.92079) Full Text: DOI
Carson, Jake; Ledda, Alice; Ferretti, Luca; Keeling, Matt; Didelot, Xavier The bounded coalescent model: conditioning a genealogy on a minimum root date. (English) Zbl 1493.92038 J. Theor. Biol. 548, Article ID 111186, 11 p. (2022). MSC: 92D15 92-04 PDFBibTeX XMLCite \textit{J. Carson} et al., J. Theor. Biol. 548, Article ID 111186, 11 p. (2022; Zbl 1493.92038) Full Text: DOI
Richards, A.; Kubatko, L. Site pattern probabilities under the multispecies coalescent and a relaxed molecular clock: theory and applications. (English) Zbl 1489.92109 J. Theor. Biol. 542, Article ID 111078, 13 p. (2022). MSC: 92D15 PDFBibTeX XMLCite \textit{A. Richards} and \textit{L. Kubatko}, J. Theor. Biol. 542, Article ID 111078, 13 p. (2022; Zbl 1489.92109) Full Text: DOI
Ho, Lam Si Tung; Susko, Edward Ancestral state reconstruction with large numbers of sequences and edge-length estimation. (English) Zbl 1493.92039 J. Math. Biol. 84, No. 4, Paper No. 21, 28 p. (2022). Reviewer: Andrey Zahariev (Plovdiv) MSC: 92D15 PDFBibTeX XMLCite \textit{L. S. T. Ho} and \textit{E. Susko}, J. Math. Biol. 84, No. 4, Paper No. 21, 28 p. (2022; Zbl 1493.92039) Full Text: DOI arXiv
Catanzaro, Daniele; Frohn, Martin; Gascuel, Olivier; Pesenti, Raffaele A tutorial on the balanced minimum evolution problem. (English) Zbl 1495.90148 Eur. J. Oper. Res. 300, No. 1, 1-19 (2022). MSC: 90C27 05C05 92D15 90-01 PDFBibTeX XMLCite \textit{D. Catanzaro} et al., Eur. J. Oper. Res. 300, No. 1, 1--19 (2022; Zbl 1495.90148) Full Text: DOI HAL
van Wersch, Rim; Kelk, Steven; Linz, Simone; Stamoulis, Georgios Reflections on kernelizing and computing unrooted agreement forests. (English) Zbl 1480.92156 Ann. Oper. Res. 309, No. 1, 425-451 (2022). MSC: 92D15 05C05 05C12 68Q17 90C10 PDFBibTeX XMLCite \textit{R. van Wersch} et al., Ann. Oper. Res. 309, No. 1, 425--451 (2022; Zbl 1480.92156) Full Text: DOI arXiv
Sashittal, Palash; Zaccaria, Simone; El-Kebir, Mohammed Parsimonious clone tree reconciliation in cancer. (English) Zbl 1519.92172 Carbone, Alessandra (ed.) et al., 21st international workshop on algorithms in bioinformatics, WABI 2021, August 2–4, 2021, virtual conference. Proceedings. Wadern: Schloss Dagstuhl – Leibniz-Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 201, Article 9, 21 p. (2021). MSC: 92D20 92C32 90C11 92-08 PDFBibTeX XMLCite \textit{P. Sashittal} et al., LIPIcs -- Leibniz Int. Proc. Inform. 201, Article 9, 21 p. (2021; Zbl 1519.92172) Full Text: DOI
Scornavacca, Celine; Weller, Mathias Treewidth-based algorithms for the small parsimony problem on networks. (English) Zbl 1519.92150 Carbone, Alessandra (ed.) et al., 21st international workshop on algorithms in bioinformatics, WABI 2021, August 2–4, 2021, virtual conference. Proceedings. Wadern: Schloss Dagstuhl – Leibniz-Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 201, Article 6, 21 p. (2021). MSC: 92D15 90C39 92-08 PDFBibTeX XMLCite \textit{C. Scornavacca} and \textit{M. Weller}, LIPIcs -- Leibniz Int. Proc. Inform. 201, Article 6, 21 p. (2021; Zbl 1519.92150) Full Text: DOI
Lemay, Matthew; Wu, Yi-Chieh; Libeskind-Hadas, Ran The most parsimonious reconciliation problem in the presence of incomplete lineage sorting and hybridization is NP-hard. (English) Zbl 1519.92144 Carbone, Alessandra (ed.) et al., 21st international workshop on algorithms in bioinformatics, WABI 2021, August 2–4, 2021, virtual conference. Proceedings. Wadern: Schloss Dagstuhl – Leibniz-Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 201, Article 1, 10 p. (2021). MSC: 92D15 68Q25 PDFBibTeX XMLCite \textit{M. Lemay} et al., LIPIcs -- Leibniz Int. Proc. Inform. 201, Article 1, 10 p. (2021; Zbl 1519.92144) Full Text: DOI
Hellmuth, Marc; Seemann, Carsten R.; Stadler, Peter F. Generalized Fitch graphs. III: Symmetrized Fitch maps and sets of symmetric binary relations that are explained by unrooted edge-labeled trees. (English) Zbl 1498.05058 Discrete Math. Theor. Comput. Sci. 23, No. 1, Paper No. 13, 20 p. (2021). MSC: 05C05 05C78 05C85 68Q17 92D10 PDFBibTeX XMLCite \textit{M. Hellmuth} et al., Discrete Math. Theor. Comput. Sci. 23, No. 1, Paper No. 13, 20 p. (2021; Zbl 1498.05058) Full Text: DOI arXiv Link
King, Matthew C.; Rosenberg, Noah A. A simple derivation of the mean of the Sackin index of tree balance under the uniform model on rooted binary labeled trees. (English) Zbl 1480.92149 Math. Biosci. 342, Article ID 108688, 3 p. (2021). MSC: 92D15 PDFBibTeX XMLCite \textit{M. C. King} and \textit{N. A. Rosenberg}, Math. Biosci. 342, Article ID 108688, 3 p. (2021; Zbl 1480.92149) Full Text: DOI
Kersting, Sophie J.; Fischer, Mareike Measuring tree balance using symmetry nodes – a new balance index and its extremal properties. (English) Zbl 1480.92148 Math. Biosci. 341, Article ID 108690, 14 p. (2021). MSC: 92D15 PDFBibTeX XMLCite \textit{S. J. Kersting} and \textit{M. Fischer}, Math. Biosci. 341, Article ID 108690, 14 p. (2021; Zbl 1480.92148) Full Text: DOI arXiv
Wedell, Eleanor; Cai, Yirong; Warnow, Tandy Scalable and accurate phylogenetic placement using pplacer-XR. (English) Zbl 1480.92157 Martín-Vide, Carlos (ed.) et al., Algorithms for computational biology. 8th international conference, AlCoB 2021, Missoula, MT, USA, June 7–11, 2021. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12715, 94-105 (2021). MSC: 92D15 PDFBibTeX XMLCite \textit{E. Wedell} et al., Lect. Notes Comput. Sci. 12715, 94--105 (2021; Zbl 1480.92157) Full Text: DOI
Bastide, Paul; Ho, Lam Si Tung; Baele, Guy; Lemey, Philippe; Suchard, Marc A. Efficient Bayesian inference of general Gaussian models on large phylogenetic trees. (English) Zbl 1477.62308 Ann. Appl. Stat. 15, No. 2, 971-997 (2021). MSC: 62P10 62F15 62H22 92D15 PDFBibTeX XMLCite \textit{P. Bastide} et al., Ann. Appl. Stat. 15, No. 2, 971--997 (2021; Zbl 1477.62308) Full Text: DOI arXiv
Wang, Bruce; Sudijono, Timothy; Kirveslahti, Henry; Gao, Tingran; Boyer, Douglas M.; Mukherjee, Sayan; Crawford, Lorin A statistical pipeline for identifying physical features that differentiate classes of 3D shapes. (English) Zbl 1478.62390 Ann. Appl. Stat. 15, No. 2, 638-661 (2021). MSC: 62R40 62P10 62H35 60G15 92D15 PDFBibTeX XMLCite \textit{B. Wang} et al., Ann. Appl. Stat. 15, No. 2, 638--661 (2021; Zbl 1478.62390) Full Text: DOI
Collienne, Lena; Elmes, Kieran; Fischer, Mareike; Bryant, David; Gavryushkin, Alex Discrete coalescent trees. (English) Zbl 1475.92116 J. Math. Biol. 83, No. 5, Paper No. 60, 25 p. (2021). MSC: 92D15 05C85 68Q25 PDFBibTeX XMLCite \textit{L. Collienne} et al., J. Math. Biol. 83, No. 5, Paper No. 60, 25 p. (2021; Zbl 1475.92116) Full Text: DOI
Feng, Jean; Dewitt, William S. III; McKenna, Aaron; Simon, Noah; Willis, Amy D.; Matsen, Frederick A. IV Estimation of cell lineage trees by maximum-likelihood phylogenetics. (English) Zbl 1475.62255 Ann. Appl. Stat. 15, No. 1, 343-362 (2021). MSC: 62P10 62F12 92C37 PDFBibTeX XMLCite \textit{J. Feng} et al., Ann. Appl. Stat. 15, No. 1, 343--362 (2021; Zbl 1475.62255) Full Text: DOI arXiv
Zhang, Zhenyu; Nishimura, Akihiko; Bastide, Paul; Ji, Xiang; Payne, Rebecca P.; Goulder, Philip; Lemey, Philippe; Suchard, Marc A. Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models. (English) Zbl 1475.62273 Ann. Appl. Stat. 15, No. 1, 230-251 (2021). MSC: 62P10 62H20 PDFBibTeX XMLCite \textit{Z. Zhang} et al., Ann. Appl. Stat. 15, No. 1, 230--251 (2021; Zbl 1475.62273) Full Text: DOI arXiv
Alimpiev, Egor; Rosenberg, Noah A. Enumeration of coalescent histories for caterpillar species trees and \(p\)-pseudocaterpillar gene trees. (English) Zbl 1471.92232 Adv. Appl. Math. 131, Article ID 102265, 34 p. (2021). MSC: 92D15 92B10 92D10 05A15 PDFBibTeX XMLCite \textit{E. Alimpiev} and \textit{N. A. Rosenberg}, Adv. Appl. Math. 131, Article ID 102265, 34 p. (2021; Zbl 1471.92232) Full Text: DOI arXiv
Frohn, Martin On the approximability of the fixed-tree balanced minimum evolution problem. (English) Zbl 1475.90081 Optim. Lett. 15, No. 6, 2321-2329 (2021). MSC: 90C27 90C35 PDFBibTeX XMLCite \textit{M. Frohn}, Optim. Lett. 15, No. 6, 2321--2329 (2021; Zbl 1475.90081) Full Text: DOI
Forcey, Stefan; Scalzo, Drew Galois connections for phylogenetic networks and their polytopes. (English) Zbl 1470.92216 J. Algebr. Comb. 54, No. 1, 173-203 (2021). MSC: 92D15 05C90 06B35 PDFBibTeX XMLCite \textit{S. Forcey} and \textit{D. Scalzo}, J. Algebr. Comb. 54, No. 1, 173--203 (2021; Zbl 1470.92216) Full Text: DOI arXiv
Susko, Edward; Steel, Mike; Roger, Andrew J. Conditions under which distributions of edge length ratios on phylogenetic trees can be used to order evolutionary events. (English) Zbl 1467.92142 J. Theor. Biol. 526, Article ID 110788, 7 p. (2021). MSC: 92D15 PDFBibTeX XMLCite \textit{E. Susko} et al., J. Theor. Biol. 526, Article ID 110788, 7 p. (2021; Zbl 1467.92142) Full Text: DOI DOI
van Iersel, Leo; Janssen, Remie; Jones, Mark; Murakami, Yukihiro; Zeh, Norbert A unifying characterization of tree-based networks and orchard networks using cherry covers. (English) Zbl 1467.92143 Adv. Appl. Math. 129, Article ID 102222, 23 p. (2021). MSC: 92D15 92B10 05C90 PDFBibTeX XMLCite \textit{L. van Iersel} et al., Adv. Appl. Math. 129, Article ID 102222, 23 p. (2021; Zbl 1467.92143) Full Text: DOI arXiv
Jaffe, Ariel; Amsel, Noah; Aizenbud, Yariv; Nadler, Boaz; Chang, Joseph T.; Kluger, Yuval Spectral neighbor joining for reconstruction of latent tree models. (English) Zbl 1468.62301 SIAM J. Math. Data Sci. 3, No. 1, 113-141 (2021). MSC: 62H22 62M05 62M15 15A18 PDFBibTeX XMLCite \textit{A. Jaffe} et al., SIAM J. Math. Data Sci. 3, No. 1, 113--141 (2021; Zbl 1468.62301) Full Text: DOI arXiv
Zhang, Cheng; Dinh, Vu; Matsen, Frederick A. IV Nonbifurcating phylogenetic tree inference via the adaptive Lasso. (English) Zbl 1464.62480 J. Am. Stat. Assoc. 116, No. 534, 858-873 (2021). MSC: 62P10 62F35 62J07 PDFBibTeX XMLCite \textit{C. Zhang} et al., J. Am. Stat. Assoc. 116, No. 534, 858--873 (2021; Zbl 1464.62480) Full Text: DOI arXiv Link
Rosenberg, Noah A. On the Colijn-Plazzotta numbering scheme for unlabeled binary rooted trees. (English) Zbl 1469.05033 Discrete Appl. Math. 291, 88-98 (2021). MSC: 05C05 05C30 92D15 PDFBibTeX XMLCite \textit{N. A. Rosenberg}, Discrete Appl. Math. 291, 88--98 (2021; Zbl 1469.05033) Full Text: DOI
Casanellas, Marta; Fernández-Sánchez, Jesús; Garrote-López, Marina Distance to the stochastic part of phylogenetic varieties. (English) Zbl 1468.92045 J. Symb. Comput. 104, 653-682 (2021). MSC: 92D15 60J20 PDFBibTeX XMLCite \textit{M. Casanellas} et al., J. Symb. Comput. 104, 653--682 (2021; Zbl 1468.92045) Full Text: DOI arXiv
Hollering, Benjamin; Sullivant, Seth Identifiability in phylogenetics using algebraic matroids. (English) Zbl 1455.92103 J. Symb. Comput. 104, 142-158 (2021). MSC: 92D15 13P25 14M25 PDFBibTeX XMLCite \textit{B. Hollering} and \textit{S. Sullivant}, J. Symb. Comput. 104, 142--158 (2021; Zbl 1455.92103) Full Text: DOI arXiv
Manceau, Marc; Gupta, Ankit; Vaughan, Timothy; Stadler, Tanja The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data. (English) Zbl 1457.92130 J. Theor. Biol. 509, Article ID 110400, 19 p. (2021). MSC: 92D15 PDFBibTeX XMLCite \textit{M. Manceau} et al., J. Theor. Biol. 509, Article ID 110400, 19 p. (2021; Zbl 1457.92130) Full Text: DOI
Jones, Mark; Kelk, Steven; Stougie, Leen Maximum parsimony distance on phylogenetic trees: a linear kernel and constant factor approximation algorithm. (English) Zbl 1477.68133 J. Comput. Syst. Sci. 117, 165-181 (2021). MSC: 68Q27 68W25 92D15 PDFBibTeX XMLCite \textit{M. Jones} et al., J. Comput. Syst. Sci. 117, 165--181 (2021; Zbl 1477.68133) Full Text: DOI arXiv
Kordi, Misagh; Bansal, Mukul S. TreeSolve: rapid error-correction of microbial gene trees. (English) Zbl 1500.92067 Martín-Vide, Carlos (ed.) et al., Algorithms for computational biology. 7th international conference, AlCoB 2020, Missoula, MT, USA, April 13–15, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12099, 125-139 (2020). MSC: 92D15 93C70 92-08 PDFBibTeX XMLCite \textit{M. Kordi} and \textit{M. S. Bansal}, Lect. Notes Comput. Sci. 12099, 125--139 (2020; Zbl 1500.92067) Full Text: DOI
Janssen, Remie; Murakami, Yukihiro Linear time algorithm for tree-child network containment. (English) Zbl 1500.92066 Martín-Vide, Carlos (ed.) et al., Algorithms for computational biology. 7th international conference, AlCoB 2020, Missoula, MT, USA, April 13–15, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12099, 93-107 (2020). MSC: 92D15 92C42 PDFBibTeX XMLCite \textit{R. Janssen} and \textit{Y. Murakami}, Lect. Notes Comput. Sci. 12099, 93--107 (2020; Zbl 1500.92066) Full Text: DOI
Hannaford, Naomi E.; Heaps, Sarah E.; Nye, Tom M. W.; Williams, Tom A.; Embley, T. Martin Incorporating compositional heterogeneity into Lie Markov models for phylogenetic inference. (English) Zbl 1498.62218 Ann. Appl. Stat. 14, No. 4, 1964-1983 (2020). MSC: 62P10 92D15 62-04 PDFBibTeX XMLCite \textit{N. E. Hannaford} et al., Ann. Appl. Stat. 14, No. 4, 1964--1983 (2020; Zbl 1498.62218) Full Text: DOI arXiv
Xia, Xuhua A mathematical primer of molecular phylogenetics. (English) Zbl 1483.92001 Boca Raton, FL: CRC Press/Apple Academic Press (ISBN 978-1-77188-755-7/hbk; 978-1-77463-006-8/pbk; 978-0-429-42587-5/ebook). xiii, 366 p. (2020). Reviewer: Andrey Zahariev (Plovdiv) MSC: 92-01 92D15 92D10 92C40 PDFBibTeX XMLCite \textit{X. Xia}, A mathematical primer of molecular phylogenetics. Boca Raton, FL: CRC Press/Apple Academic Press (2020; Zbl 1483.92001) Full Text: DOI
Faulkner, James R.; Magee, Andrew F.; Shapiro, Beth; Minin, Vladimir N. Horseshoe-based Bayesian nonparametric estimation of effective population size trajectories. (English) Zbl 1468.62381 Biometrics 76, No. 3, 677-690 (2020). MSC: 62P10 62G05 62G10 92D10 PDFBibTeX XMLCite \textit{J. R. Faulkner} et al., Biometrics 76, No. 3, 677--690 (2020; Zbl 1468.62381) Full Text: DOI arXiv
Spade, David A. Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths. (English) Zbl 1505.62384 Comput. Stat. 35, No. 4, 2043-2076 (2020). MSC: 62-08 62P10 65C05 60J05 62F15 92D15 PDFBibTeX XMLCite \textit{D. A. Spade}, Comput. Stat. 35, No. 4, 2043--2076 (2020; Zbl 1505.62384) Full Text: DOI
Abou-Shaara, Hossam Farag Using simple statistics to compare genetic sequences. (English) Zbl 1454.62306 Thail. Stat. 18, No. 3, 373-380 (2020). MSC: 62P10 92C15 62J10 62H30 PDFBibTeX XMLCite \textit{H. F. Abou-Shaara}, Thail. Stat. 18, No. 3, 373--380 (2020; Zbl 1454.62306) Full Text: Link
Gross, Elizabeth; Long, Colby; Rusinko, Joseph Phylogenetic networks. (English) Zbl 1448.92155 Harris, Pamela E. (ed.) et al., A project-based guide to undergraduate research in mathematics. Starting and sustaining accessible undergraduate research. Cham: Birkhäuser. Found. Undergrad. Res. Math., 29-61 (2020). MSC: 92D15 92C42 05C90 PDFBibTeX XMLCite \textit{E. Gross} et al., in: A project-based guide to undergraduate research in mathematics. Starting and sustaining accessible undergraduate research. Cham: Birkhäuser. 29--61 (2020; Zbl 1448.92155) Full Text: DOI arXiv
Hellmuth, Marc; Seemann, Carsten R.; Stadler, Peter F. Generalized Fitch graphs. II: Sets of binary relations that are explained by edge-labeled trees. (English) Zbl 1442.05031 Discrete Appl. Math. 283, 495-511 (2020). MSC: 05C05 05C78 05C85 05C20 05C90 92D10 PDFBibTeX XMLCite \textit{M. Hellmuth} et al., Discrete Appl. Math. 283, 495--511 (2020; Zbl 1442.05031) Full Text: DOI arXiv
Wang, Gang; Mao, Hua Approximation operators based on preconcepts. (English) Zbl 1471.68278 Open Math. 18, 400-416 (2020). MSC: 68T30 68T37 92B05 92D15 PDFBibTeX XMLCite \textit{G. Wang} and \textit{H. Mao}, Open Math. 18, 400--416 (2020; Zbl 1471.68278) Full Text: DOI
Catanzaro, Daniele; Frohn, Martin; Pesenti, Raffaele An information theory perspective on the balanced minimum evolution problem. (English) Zbl 1525.92050 Oper. Res. Lett. 48, No. 3, 362-367 (2020). MSC: 92D15 90C90 90C05 94A17 PDFBibTeX XMLCite \textit{D. Catanzaro} et al., Oper. Res. Lett. 48, No. 3, 362--367 (2020; Zbl 1525.92050) Full Text: DOI
Yu, Luyan Extreme rays of the \(\ell^\infty\)-nearest ultrametric tropical polytope. (English) Zbl 1437.92092 Linear Algebra Appl. 587, 23-44 (2020). MSC: 92D15 14T90 PDFBibTeX XMLCite \textit{L. Yu}, Linear Algebra Appl. 587, 23--44 (2020; Zbl 1437.92092) Full Text: DOI arXiv
Bernstein, Daniel Irving L-infinity optimization to Bergman fans of matroids with an application to phylogenetics. (English) Zbl 1439.14181 SIAM J. Discrete Math. 34, No. 1, 701-720 (2020). MSC: 14T15 05B35 14T90 92D15 PDFBibTeX XMLCite \textit{D. I. Bernstein}, SIAM J. Discrete Math. 34, No. 1, 701--720 (2020; Zbl 1439.14181) Full Text: DOI arXiv
Chauve, Cedric; Ponty, Yann; Wallner, Michael Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models. (English) Zbl 1435.92043 J. Math. Biol. 80, No. 5, 1353-1388 (2020). Reviewer: Fatima T. Adylova (Tashkent) MSC: 92D15 05A15 05A16 PDFBibTeX XMLCite \textit{C. Chauve} et al., J. Math. Biol. 80, No. 5, 1353--1388 (2020; Zbl 1435.92043) Full Text: DOI arXiv
Durell, Cassandra; Forcey, Stefan Level-1 phylogenetic networks and their balanced minimum evolution polytopes. (English) Zbl 1440.90021 J. Math. Biol. 80, No. 5, 1235-1263 (2020). MSC: 90C05 52B11 92D15 PDFBibTeX XMLCite \textit{C. Durell} and \textit{S. Forcey}, J. Math. Biol. 80, No. 5, 1235--1263 (2020; Zbl 1440.90021) Full Text: DOI arXiv
Fan, Wai-Tong; Roch, Sebastien Statistically consistent and computationally efficient inference of ancestral DNA sequences in the TKF91 model under dense taxon sampling. (English) Zbl 1435.92044 Bull. Math. Biol. 82, No. 2, Paper No. 21, 32 p. (2020). Reviewer: Andrey Zahariev (Plovdiv) MSC: 92D15 92D20 PDFBibTeX XMLCite \textit{W.-T. Fan} and \textit{S. Roch}, Bull. Math. Biol. 82, No. 2, Paper No. 21, 32 p. (2020; Zbl 1435.92044) Full Text: DOI arXiv
Ho, Lam Si Tung; Dinh, Vu; Matsen, Frederick A. IV; Suchard, Marc A. On the convergence of the maximum likelihood estimator for the transition rate under a 2-state symmetric model. (English) Zbl 1431.62087 J. Math. Biol. 80, No. 4, 1119-1138 (2020). MSC: 62F12 92D15 92B10 PDFBibTeX XMLCite \textit{L. S. T. Ho} et al., J. Math. Biol. 80, No. 4, 1119--1138 (2020; Zbl 1431.62087) Full Text: DOI arXiv
Gupta, Ankit; Manceau, Marc; Vaughan, Timothy; Khammash, Mustafa; Stadler, Tanja The probability distribution of the reconstructed phylogenetic tree with occurrence data. (English) Zbl 1430.92054 J. Theor. Biol. 488, Article ID 110115, 10 p. (2020). MSC: 92D15 60J85 92D30 PDFBibTeX XMLCite \textit{A. Gupta} et al., J. Theor. Biol. 488, Article ID 110115, 10 p. (2020; Zbl 1430.92054) Full Text: DOI Link
Lambert, Amaury; Schertzer, Emmanuel Coagulation-transport equations and the nested coalescents. (English) Zbl 1434.60298 Probab. Theory Relat. Fields 176, No. 1-2, 77-147 (2020). MSC: 60K35 35Q91 35R09 60G09 60B10 60G55 60G57 60J25 60J76 60J80 62G30 92D15 PDFBibTeX XMLCite \textit{A. Lambert} and \textit{E. Schertzer}, Probab. Theory Relat. Fields 176, No. 1--2, 77--147 (2020; Zbl 1434.60298) Full Text: DOI arXiv
Duchen, Pablo; Hautphenne, Sophie; Lehmann, Laurent; Salamin, Nicolas Linking micro and macroevolution in the presence of migration. (English) Zbl 1429.92110 J. Theor. Biol. 486, Article ID 110087, 12 p. (2020). MSC: 92D15 92D10 60J60 PDFBibTeX XMLCite \textit{P. Duchen} et al., J. Theor. Biol. 486, Article ID 110087, 12 p. (2020; Zbl 1429.92110) Full Text: DOI
Borges, Rui; Kosiol, Carolin Consistency and identifiability of the polymorphism-aware phylogenetic models. (English) Zbl 1429.92109 J. Theor. Biol. 486, Article ID 110074, 6 p. (2020). MSC: 92D15 92D10 PDFBibTeX XMLCite \textit{R. Borges} and \textit{C. Kosiol}, J. Theor. Biol. 486, Article ID 110074, 6 p. (2020; Zbl 1429.92109) Full Text: DOI
Jarvis, Peter D.; Sumner, Jeremy G. Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics. (English) Zbl 1509.92014 J. Phys. A, Math. Theor. 52, No. 45, Article ID 453001, 56 p. (2019). MSC: 92D10 92D20 81P40 PDFBibTeX XMLCite \textit{P. D. Jarvis} and \textit{J. G. Sumner}, J. Phys. A, Math. Theor. 52, No. 45, Article ID 453001, 56 p. (2019; Zbl 1509.92014) Full Text: DOI arXiv
Ellinas, Demosthenes; Jarvis, Peter D. Quantum channel simulation of phylogenetic branching models. (English) Zbl 1507.81060 J. Phys. A, Math. Theor. 52, No. 11, Article ID 115601, 11 p. (2019). MSC: 81P47 94A40 81P68 68Q12 PDFBibTeX XMLCite \textit{D. Ellinas} and \textit{P. D. Jarvis}, J. Phys. A, Math. Theor. 52, No. 11, Article ID 115601, 11 p. (2019; Zbl 1507.81060) Full Text: DOI
Markin, Alexey; Eulenstein, Oliver Consensus clusters in Robinson-Foulds reticulation networks. (English) Zbl 1495.92047 Huber, Katharina T. (ed.) et al., 19th international workshop on algorithms in bioinformatics, WABI 2019, Niagara Falls, NY, USA, September 8–10, 2019. Proceedings. Wadern: Schloss Dagstuhl – Leibniz-Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 143, Article 12, 12 p. (2019). MSC: 92D15 68R10 92-08 PDFBibTeX XMLCite \textit{A. Markin} and \textit{O. Eulenstein}, LIPIcs -- Leibniz Int. Proc. Inform. 143, Article 12, 12 p. (2019; Zbl 1495.92047) Full Text: DOI
Wittler, Roland Alignment- and reference-free phylogenomics with colored de Bruijn graphs. (English) Zbl 1495.92049 Huber, Katharina T. (ed.) et al., 19th international workshop on algorithms in bioinformatics, WABI 2019, Niagara Falls, NY, USA, September 8–10, 2019. Proceedings. Wadern: Schloss Dagstuhl – Leibniz-Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 143, Article 2, 14 p. (2019). MSC: 92D15 05C90 92-08 PDFBibTeX XMLCite \textit{R. Wittler}, LIPIcs -- Leibniz Int. Proc. Inform. 143, Article 2, 14 p. (2019; Zbl 1495.92049) Full Text: DOI arXiv
Botte, Marco Facility location in the phylogenetic tree space. (English) Zbl 1439.92001 Göttingen: Univ. Göttingen (Diss.). vi, 229 p. (2019). MSC: 92-02 92D15 92D10 05C05 PDFBibTeX XMLCite \textit{M. Botte}, Facility location in the phylogenetic tree space. Göttingen: Univ. Göttingen (Diss.) (2019; Zbl 1439.92001) Full Text: Link Link
Devadoss, Satyan L.; Cassandra, Durell; Stefan, Forcey Split network polytopes and network spaces. (English) Zbl 1435.05050 Sémin. Lothar. Comb. 82B, Article 68, 12 p. (2019). MSC: 05C05 05C82 92D15 05C90 90C35 05E45 PDFBibTeX XMLCite \textit{S. L. Devadoss} et al., Sémin. Lothar. Comb. 82B, Article 68, 12 p. (2019; Zbl 1435.05050) Full Text: arXiv Link
Erdős, Péter L.; van Iersel, Leo; Jones, Mark Not all phylogenetic networks are leaf-reconstructible. (English) Zbl 1423.05107 J. Math. Biol. 79, No. 5, 1623-1638 (2019). MSC: 05C60 05C90 92D15 PDFBibTeX XMLCite \textit{P. L. Erdős} et al., J. Math. Biol. 79, No. 5, 1623--1638 (2019; Zbl 1423.05107) Full Text: DOI arXiv
Disanto, Filippo; Miglionico, Pasquale; Narduzzi, Guido On the unranked topology of maximally probable ranked gene tree topologies. (English) Zbl 1423.05045 J. Math. Biol. 79, No. 4, 1205-1225 (2019). MSC: 05C05 05C90 92B10 92D15 PDFBibTeX XMLCite \textit{F. Disanto} et al., J. Math. Biol. 79, No. 4, 1205--1225 (2019; Zbl 1423.05045) Full Text: DOI Link
Yoshida, Ruriko; Fukumizu, Kenji; Vogiatzis, Chrysafis Multilocus phylogenetic analysis with gene tree clustering. (English) Zbl 1425.92145 Ann. Oper. Res. 276, No. 1-2, 293-313 (2019). MSC: 92D15 PDFBibTeX XMLCite \textit{R. Yoshida} et al., Ann. Oper. Res. 276, No. 1--2, 293--313 (2019; Zbl 1425.92145) Full Text: DOI arXiv
Janssen, Remie; Jones, Mark; Kelk, Steven; Stamoulis, Georgios; Wu, Taoyang Treewidth of display graphs: bounds, brambles and applications. (English) Zbl 1419.05187 J. Graph Algorithms Appl. 23, No. 4, 715-743 (2019). MSC: 05C78 05C82 05C05 05C85 05C90 PDFBibTeX XMLCite \textit{R. Janssen} et al., J. Graph Algorithms Appl. 23, No. 4, 715--743 (2019; Zbl 1419.05187) Full Text: DOI arXiv
Hellmuth, Marc Generalized Fitch graphs: edge-labeled graphs that are explained by edge-labeled trees. (English) Zbl 1419.05046 Discrete Appl. Math. 267, 1-11 (2019). MSC: 05C05 05C60 05C85 PDFBibTeX XMLCite \textit{M. Hellmuth}, Discrete Appl. Math. 267, 1--11 (2019; Zbl 1419.05046) Full Text: DOI arXiv
Warnow, Tandy (ed.) Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret. (English) Zbl 1429.92003 Computational Biology 29. Cham: Springer (ISBN 978-3-030-10836-6/hbk; 978-3-030-10837-3/ebook). xxv, 410 p. (2019). Reviewer: Irina Ioana Mohorianu (Oxford) MSC: 92-06 00B15 92D15 92C42 90C10 PDFBibTeX XMLCite \textit{T. Warnow} (ed.), Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret. Cham: Springer (2019; Zbl 1429.92003) Full Text: DOI Link
Catanzaro, Daniele; Pesenti, Raffaele Enumerating vertices of the balanced minimum evolution polytope. (English) Zbl 1458.90639 Comput. Oper. Res. 109, 209-217 (2019). MSC: 90C57 90C27 92D15 94B05 PDFBibTeX XMLCite \textit{D. Catanzaro} and \textit{R. Pesenti}, Comput. Oper. Res. 109, 209--217 (2019; Zbl 1458.90639) Full Text: DOI
Mariñas-Collado, Irene; Bowman, Adrian; Macaulay, Vincent A phylogenetic Gaussian process model for the evolution of curves embedded in \(d\)-dimensions. (English) Zbl 1507.62128 Comput. Stat. Data Anal. 137, 285-298 (2019). MSC: 62-08 62H11 PDFBibTeX XMLCite \textit{I. Mariñas-Collado} et al., Comput. Stat. Data Anal. 137, 285--298 (2019; Zbl 1507.62128) Full Text: DOI Link
Saunders, Amanda M.; Ashlock, Daniel; Graether, Steffen P. Testing the rogue taxa hypothesis for clustering instability. (English) Zbl 1412.92226 J. Theor. Biol. 472, 36-45 (2019). MSC: 92D15 62P10 PDFBibTeX XMLCite \textit{A. M. Saunders} et al., J. Theor. Biol. 472, 36--45 (2019; Zbl 1412.92226) Full Text: DOI
Döcker, Janosch; van Iersel, Leo; Kelk, Steven; Linz, Simone Deciding the existence of a cherry-picking sequence is hard on two trees. (English) Zbl 1409.05191 Discrete Appl. Math. 260, 131-143 (2019). MSC: 05C82 05C90 68Q17 92B10 92D15 PDFBibTeX XMLCite \textit{J. Döcker} et al., Discrete Appl. Math. 260, 131--143 (2019; Zbl 1409.05191) Full Text: DOI arXiv Link
Disanto, Filippo; Rosenberg, Noah A. Enumeration of compact coalescent histories for matching gene trees and species trees. (English) Zbl 1407.05129 J. Math. Biol. 78, No. 1-2, 155-188 (2019). MSC: 05C30 05A15 05A16 05C90 92D15 PDFBibTeX XMLCite \textit{F. Disanto} and \textit{N. A. Rosenberg}, J. Math. Biol. 78, No. 1--2, 155--188 (2019; Zbl 1407.05129) Full Text: DOI Link
Baños, Hector Identifying species network features from gene tree quartets under the coalescent model. (English) Zbl 1410.92070 Bull. Math. Biol. 81, No. 2, 494-534 (2019). MSC: 92D15 05C90 PDFBibTeX XMLCite \textit{H. Baños}, Bull. Math. Biol. 81, No. 2, 494--534 (2019; Zbl 1410.92070) Full Text: DOI arXiv Link
Kim, Jaehee; Disanto, Filippo; Kopelman, Naama M.; Rosenberg, Noah A. Mathematical and simulation-based analysis of the behavior of admixed taxa in the neighbor-joining algorithm. (English) Zbl 1410.92076 Bull. Math. Biol. 81, No. 2, 452-493 (2019). MSC: 92D15 92B10 PDFBibTeX XMLCite \textit{J. Kim} et al., Bull. Math. Biol. 81, No. 2, 452--493 (2019; Zbl 1410.92076) Full Text: DOI Link
Disanto, Filippo; Rosenberg, Noah A. On the number of non-equivalent ancestral configurations for matching gene trees and species trees. (English) Zbl 1410.92072 Bull. Math. Biol. 81, No. 2, 384-407 (2019). MSC: 92D15 05A99 PDFBibTeX XMLCite \textit{F. Disanto} and \textit{N. A. Rosenberg}, Bull. Math. Biol. 81, No. 2, 384--407 (2019; Zbl 1410.92072) Full Text: DOI Link
Sumner, Jeremy G.; Woodhams, Michael D. Lie-Markov models derived from finite semigroups. (English) Zbl 1411.60113 Bull. Math. Biol. 81, No. 2, 361-383 (2019). MSC: 60J27 22E60 92D15 60J28 PDFBibTeX XMLCite \textit{J. G. Sumner} and \textit{M. D. Woodhams}, Bull. Math. Biol. 81, No. 2, 361--383 (2019; Zbl 1411.60113) Full Text: DOI arXiv
Kosta, Dimitra; Kubjas, Kaie Maximum likelihood estimation of symmetric group-based models via numerical algebraic geometry. (English) Zbl 1410.92077 Bull. Math. Biol. 81, No. 2, 337-360 (2019). MSC: 92D15 14P99 92-04 PDFBibTeX XMLCite \textit{D. Kosta} and \textit{K. Kubjas}, Bull. Math. Biol. 81, No. 2, 337--360 (2019; Zbl 1410.92077) Full Text: DOI
Åstrand, Mia; Cuellar, Julia; Hytönen, Jukka; Salminen, Tiina A. Predicting the ligand-binding properties of Borrelia burgdorferi s.s. Bmp proteins in light of the conserved features of related Borrelia proteins. (English) Zbl 1406.92166 J. Theor. Biol. 462, 97-108 (2019). MSC: 92C40 92D15 PDFBibTeX XMLCite \textit{M. Åstrand} et al., J. Theor. Biol. 462, 97--108 (2019; Zbl 1406.92166) Full Text: DOI
Michałek, Mateusz; Ventura, Emanuele Phylogenetic complexity of the Kimura 3-parameter model. (English) Zbl 1412.14031 Adv. Math. 343, 640-680 (2019). Reviewer: Christos Tatakis (Mitilini) MSC: 14M25 13P25 52B20 05C90 92E10 92D15 PDFBibTeX XMLCite \textit{M. Michałek} and \textit{E. Ventura}, Adv. Math. 343, 640--680 (2019; Zbl 1412.14031) Full Text: DOI arXiv
Cooper, Joshua; Whitlatch, Hays Uniquely pressable graphs: characterization, enumeration, and recognition. (English) Zbl 1402.05098 Adv. Appl. Math. 103, 13-42 (2019). MSC: 05C25 05C30 05C50 05C75 05C76 05C85 15A23 15B33 68R10 92D20 PDFBibTeX XMLCite \textit{J. Cooper} and \textit{H. Whitlatch}, Adv. Appl. Math. 103, 13--42 (2019; Zbl 1402.05098) Full Text: DOI arXiv
Rosenberg, Noah A. Enumeration of lonely pairs of gene trees and species trees by means of antipodal cherries. (English) Zbl 1401.05025 Adv. Appl. Math. 102, 1-17 (2019). MSC: 05A15 05C05 05C90 92D15 PDFBibTeX XMLCite \textit{N. A. Rosenberg}, Adv. Appl. Math. 102, 1--17 (2019; Zbl 1401.05025) Full Text: DOI
El-Kebir, Mohammed Parsimonious migration history problem: complexity and algorithms. (English) Zbl 1494.92076 Parida, Laxmi (ed.) et al., 18th international workshop on algorithms in bioinformatics, WABI 2018, Helsinki, Finland, August 20–22, 2018. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 113, Article 24, 14 p. (2018). MSC: 92D15 92-08 PDFBibTeX XMLCite \textit{M. El-Kebir}, LIPIcs -- Leibniz Int. Proc. Inform. 113, Article 24, 14 p. (2018; Zbl 1494.92076) Full Text: DOI
Dondi, Riccardo; Lafond, Manuel; Scornavacca, Celine Reconciling multiple genes trees via segmental duplications and losses. (English) Zbl 1494.92064 Parida, Laxmi (ed.) et al., 18th international workshop on algorithms in bioinformatics, WABI 2018, Helsinki, Finland, August 20–22, 2018. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 113, Article 5, 16 p. (2018). MSC: 92D10 92D15 92-08 PDFBibTeX XMLCite \textit{R. Dondi} et al., LIPIcs -- Leibniz Int. Proc. Inform. 113, Article 5, 16 p. (2018; Zbl 1494.92064) Full Text: DOI arXiv
Bentert, Matthias; Mallík, Josef; Weller, Mathias Tree containment with soft polytomies. (English) Zbl 1477.68199 Eppstein, David (ed.), 16th Scandinavian symposium and workshops on algorithm theory. SWAT 2018, June 18–20, 2018, Malmö University, Malmö, Sweden. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 101, Article 9, 14 p. (2018). MSC: 68R10 68Q17 92D15 PDFBibTeX XMLCite \textit{M. Bentert} et al., LIPIcs -- Leibniz Int. Proc. Inform. 101, Article 9, 14 p. (2018; Zbl 1477.68199) Full Text: DOI
Hellmuth, Marc; Long, Yangjing; Geiß, Manuela; Stadler, Peter F. A short note on undirected Fitch graphs. (English) Zbl 1421.05076 Art Discrete Appl. Math. 1, No. 1, Paper No. P1.08, 6 p. (2018). MSC: 05C75 05C05 92B10 PDFBibTeX XMLCite \textit{M. Hellmuth} et al., Art Discrete Appl. Math. 1, No. 1, Paper No. P1.08, 6 p. (2018; Zbl 1421.05076) Full Text: DOI arXiv
Shim, Heejung; Larget, Bret BayesCAT: Bayesian co-estimation of alignment and tree. (English) Zbl 1415.62135 Biometrics 74, No. 1, 270-279 (2018). MSC: 62P10 62F15 92D10 PDFBibTeX XMLCite \textit{H. Shim} and \textit{B. Larget}, Biometrics 74, No. 1, 270--279 (2018; Zbl 1415.62135) Full Text: DOI arXiv Link
Michałek, Mateusz Selected topics on toric varieties. (English) Zbl 1411.14057 Hibi, Takayuki (ed.), The 50th anniversary of Gröbner bases. Proceedings of the 8th Mathematical Society of Japan-Seasonal Institute (MSJ-SI 2015), Osaka, Japan, July 1–10, 2015. Tokyo: Mathematical Society of Japan (MSJ). Adv. Stud. Pure Math. 77, 207-252 (2018). MSC: 14M25 13P25 13F55 05E40 PDFBibTeX XMLCite \textit{M. Michałek}, Adv. Stud. Pure Math. 77, 207--252 (2018; Zbl 1411.14057) Full Text: arXiv
Bartoszek, Krzysztof Exact and approximate limit behaviour of the Yule tree’s cophenetic index. (English) Zbl 1405.92190 Math. Biosci. 303, 26-45 (2018). MSC: 92D15 05C80 60F15 60J85 62M02 62P10 92-08 92B10 PDFBibTeX XMLCite \textit{K. Bartoszek}, Math. Biosci. 303, 26--45 (2018; Zbl 1405.92190) Full Text: DOI arXiv
Manon, Christopher The algebra of conformal blocks. (English) Zbl 1428.14019 J. Eur. Math. Soc. (JEMS) 20, No. 11, 2685-2715 (2018). Reviewer: Lara Bossinger (Köln) MSC: 14D20 05E10 PDFBibTeX XMLCite \textit{C. Manon}, J. Eur. Math. Soc. (JEMS) 20, No. 11, 2685--2715 (2018; Zbl 1428.14019) Full Text: DOI arXiv
Blancas, Airam; Duchamps, Jean-Jil; Lambert, Amaury; Siri-Jégousse, Arno Trees within trees: simple nested coalescents. (English) Zbl 1414.60021 Electron. J. Probab. 23, Paper No. 94, 27 p. (2018). MSC: 60G09 60G57 60J35 60J75 92D10 92D15 PDFBibTeX XMLCite \textit{A. Blancas} et al., Electron. J. Probab. 23, Paper No. 94, 27 p. (2018; Zbl 1414.60021) Full Text: DOI arXiv Euclid
Dinh, Vu; Ho, Lam Si Tung; Suchard, Marc A.; Matsen, Frederick A. IV Consistency and convergence rate of phylogenetic inference via regularization. (English) Zbl 1395.05036 Ann. Stat. 46, No. 4, 1481-1512 (2018). MSC: 05C05 05C90 62F12 92B10 92D15 PDFBibTeX XMLCite \textit{V. Dinh} et al., Ann. Stat. 46, No. 4, 1481--1512 (2018; Zbl 1395.05036) Full Text: DOI arXiv
Fan, Wai-Tong (Louis); Roch, Sebastien Necessary and sufficient conditions for consistent root reconstruction in Markov models on trees. (English) Zbl 1410.60074 Electron. J. Probab. 23, Paper No. 47, 24 p. (2018). MSC: 60J25 60J80 92D15 92D10 62M05 PDFBibTeX XMLCite \textit{W.-T. Fan} and \textit{S. Roch}, Electron. J. Probab. 23, Paper No. 47, 24 p. (2018; Zbl 1410.60074) Full Text: DOI arXiv Euclid
Cheng, Ricson; Dohlen, Matthew; Pekker, Chen; Quiroz, Gabriel; Wang, Jincheng; Libeskind-Hadas, Ran; Wu, Yi-Chieh Reconciliation feasibility of non-binary gene trees under a duplication-loss-coalescence model. (English) Zbl 1392.92058 Jansson, Jesper (ed.) et al., Algorithms for computational biology. 5th international conference, ALCoB 2018, Hong Kong, China, June 25–26, 2018. Proceedings. Cham: Springer (ISBN 978-3-319-91937-9/pbk; 978-3-319-91938-6/ebook). Lecture Notes in Computer Science 10849. Lecture Notes in Bioinformatics, 11-23 (2018). MSC: 92D15 PDFBibTeX XMLCite \textit{R. Cheng} et al., Lect. Notes Comput. Sci. 10849, 11--23 (2018; Zbl 1392.92058) Full Text: DOI