Bian, X.; Li, Z.; Adams, N. A. A note on hydrodynamics from dissipative particle dynamics. (English) Zbl 1380.82008 AMM, Appl. Math. Mech., Engl. Ed. 39, No. 1, 63-82 (2018). MSC: 82-08 82C31 76M28 PDF BibTeX XML Cite \textit{X. Bian} et al., AMM, Appl. Math. Mech., Engl. Ed. 39, No. 1, 63--82 (2018; Zbl 1380.82008) Full Text: DOI
Jung, Jaewoon; Kobayashi, Chigusa; Imamura, Toshiyuki; Sugita, Yuji Parallel implementation of 3D FFT with volumetric decomposition schemes for efficient molecular dynamics simulations. (English) Zbl 1352.65660 Comput. Phys. Commun. 200, 57-65 (2016). MSC: 65T50 65Y05 PDF BibTeX XML Cite \textit{J. Jung} et al., Comput. Phys. Commun. 200, 57--65 (2016; Zbl 1352.65660) Full Text: DOI
Zubert, Mariusz; Janicki, Marcin; Raszkowski, Tomasz; Samson, Agnieszka; Nowak, Piotr Stanislaw; Pomorski, Krzysztof The heat transport in nanoelectronic devices and PDEs translation into hardware description languages. (English) Zbl 1322.35134 Bull. Soc. Sci. Lett. Łódź, Sér. Rech. Déform. 64, No. 3, 69-80 (2014). MSC: 35Q79 35Q82 82D80 82D37 94C05 78A35 PDF BibTeX XML Cite \textit{M. Zubert} et al., Bull. Soc. Sci. Lett. Łódź, Sér. Rech. Déform. 64, No. 3, 69--80 (2014; Zbl 1322.35134)
Liu, Yilun; Xu, Zhiping; Zheng, Quanshui The interlayer shear effect on graphene multilayer resonators. (English) Zbl 1270.74097 J. Mech. Phys. Solids 59, No. 8, 1613-1622 (2011). MSC: 74H45 74M25 PDF BibTeX XML Cite \textit{Y. Liu} et al., J. Mech. Phys. Solids 59, No. 8, 1613--1622 (2011; Zbl 1270.74097) Full Text: DOI Link
Li, Wan-Qing; Ying, Tang; Jian, Wan; Yu, Dong-Jin Comparison research on the neighbor list algorithms: Verlet table and linked-cell. (English) Zbl 1452.76260 Comput. Phys. Commun. 181, No. 10, 1682-1686 (2010). MSC: 76T25 76-10 76M28 PDF BibTeX XML Cite \textit{W.-Q. Li} et al., Comput. Phys. Commun. 181, No. 10, 1682--1686 (2010; Zbl 1452.76260) Full Text: DOI
Long, Y.; Chen, J.; Liu, Y. G.; Nie, F. D.; Sun, J. S. A MD-based method to calculate free energy for crystalline structures: from basic theory to application. (English) Zbl 1203.82045 J. Phys. A, Math. Theor. 43, No. 45, Article ID 455002, 16 p. (2010). MSC: 82B30 82D20 94A17 82B80 PDF BibTeX XML Cite \textit{Y. Long} et al., J. Phys. A, Math. Theor. 43, No. 45, Article ID 455002, 16 p. (2010; Zbl 1203.82045) Full Text: DOI
Liu, D. S.; Tsai, C. Y. Estimation of thermo-elasto-plastic properties of thin-film mechanical properties using MD nanoindentation simulations and an inverse FEM/ANN computational scheme. (English) Zbl 1257.74024 CMES, Comput. Model. Eng. Sci. 39, No. 1, 29-48 (2009). MSC: 74C05 74F05 74S05 74K35 74S30 92B20 PDF BibTeX XML Cite \textit{D. S. Liu} and \textit{C. Y. Tsai}, CMES, Comput. Model. Eng. Sci. 39, No. 1, 29--48 (2009; Zbl 1257.74024) Full Text: DOI
Moritsugu, Kei; Smith, Jeremy C. REACH: A program for coarse-grained biomolecular simulation. (English) Zbl 1198.92016 Comput. Phys. Commun. 180, No. 7, 1188-1195 (2009). MSC: 92C40 92-04 68U20 PDF BibTeX XML Cite \textit{K. Moritsugu} and \textit{J. C. Smith}, Comput. Phys. Commun. 180, No. 7, 1188--1195 (2009; Zbl 1198.92016) Full Text: DOI
Ni, Zhonghua; Zhang, Xinjie Molecular dynamics simulation for aggregation phenomena of nanocolloids. (English) Zbl 1180.82127 Sci. China, Ser. E 52, No. 2, 484-490 (2009). MSC: 82C22 82B80 78A55 60J65 90B20 PDF BibTeX XML Cite \textit{Z. Ni} and \textit{X. Zhang}, Sci. China, Ser. E 52, No. 2, 484--490 (2009; Zbl 1180.82127) Full Text: DOI
Valentini, Paolo; Schwartzentruber, Thomas E. A combined event-driven/time-driven molecular dynamics algorithm for the simulation of shock waves in rarefied gases. (English) Zbl 1287.76197 J. Comput. Phys. 228, No. 23, 8766-8778 (2009). MSC: 76P05 76L05 PDF BibTeX XML Cite \textit{P. Valentini} and \textit{T. E. Schwartzentruber}, J. Comput. Phys. 228, No. 23, 8766--8778 (2009; Zbl 1287.76197) Full Text: DOI
Dou, Xianghua; Wang, Jihua Folding free energy landscape of the decapeptide Chignolin. (English) Zbl 1171.82356 Mod. Phys. Lett. B 22, No. 31, 3087-3098 (2008). MSC: 82D60 82B80 PDF BibTeX XML Cite \textit{X. Dou} and \textit{J. Wang}, Mod. Phys. Lett. B 22, No. 31, 3087--3098 (2008; Zbl 1171.82356) Full Text: DOI
Lee, Jinhyuk; Im, Wonpil Formalisms and applications of helical restraint potentials. (English) Zbl 1329.92045 Accardi, Luigi (ed.) et al., Quantum bio-informatics. From quantum information to bio-informatics (QBIC 2007), international conference, Tokyo, Japan, March 14–17, 2007. Selected papers. Hackensack, NJ: World Scientific (ISBN 978-981-279-316-4/hbk). QP-PQ: Quantum Probability and White Noise Analysis 21, 359-370 (2008). MSC: 92C40 PDF BibTeX XML Cite \textit{J. Lee} and \textit{W. Im}, in: Quantum bio-informatics. From quantum information to bio-informatics (QBIC 2007), international conference, Tokyo, Japan, March 14--17, 2007. Selected papers. Hackensack, NJ: World Scientific. 359--370 (2008; Zbl 1329.92045) Full Text: DOI
Luding, Stefan Cohesive, frictional powders: Contact models for tension. (English) Zbl 1304.74019 Granul. Matter 10, No. 4, 235-246 (2008). MSC: 74E20 74M10 74M15 PDF BibTeX XML Cite \textit{S. Luding}, Granul. Matter 10, No. 4, 235--246 (2008; Zbl 1304.74019) Full Text: DOI
Hao, Su; Liu, Wing Kam; Moran, Brian; Vernerey, Franck; Olson, Gregory B. Multi-scale constitutive model and computational framework for the design of ultra-high strength, high toughness steels. (English) Zbl 1079.74504 Comput. Methods Appl. Mech. Eng. 193, No. 17-20, 1865-1908 (2004). MSC: 74A25 74C99 74S30 PDF BibTeX XML Cite \textit{S. Hao} et al., Comput. Methods Appl. Mech. Eng. 193, No. 17--20, 1865--1908 (2004; Zbl 1079.74504) Full Text: DOI
Kalia, Rajiv K.; Campbell, Timothy J.; Chatterjee, Alok; Nakano, Aiichiro; Vashishta, Priya; Ogata, Shuji Multiresolution algorithms for massively parallel molecular dynamics simulations of nanostructured materials. (English) Zbl 1002.81574 Comput. Phys. Commun. 128, No. 1-2, 245-259 (2000). MSC: 81V70 81V55 81-08 PDF BibTeX XML Cite \textit{R. K. Kalia} et al., Comput. Phys. Commun. 128, No. 1--2, 245--259 (2000; Zbl 1002.81574) Full Text: DOI
Ebeling, Werner; Podlipchuk, Victor Yu.; Sapeshinsky, Mikhail G. Microscopic models and simulations of local activation processes. (English) Zbl 0936.82017 Int. J. Bifurcation Chaos Appl. Sci. Eng. 8, No. 4-5, 755-765 (1998). MSC: 82C31 92C40 PDF BibTeX XML Cite \textit{W. Ebeling} et al., Int. J. Bifurcation Chaos Appl. Sci. Eng. 8, No. 4--5, 755--765 (1998; Zbl 0936.82017) Full Text: DOI
Lakamsani, Vamsee; Bhuyan, Laxmi N.; Linthicum, D. Scott Mapping molecular dynamics computations on to hypercubes. (English) Zbl 0875.68173 Parallel Comput. 21, No. 6, 993-1013 (1995). MSC: 68M99 PDF BibTeX XML Cite \textit{V. Lakamsani} et al., Parallel Comput. 21, No. 6, 993--1013 (1995; Zbl 0875.68173) Full Text: DOI