Daví, Fabrizio Existence, decay time and light yield for a reaction-diffusion-drift equation In the continuum physics of scintillators. (English) Zbl 1487.35376 Vespri, Vincenzo (ed.) et al., Harnack inequalities and nonlinear operators. Proceedings of the INdAM conference to celebrate the 70th birthday of Emmanuele DiBenedetto. Cham: Springer. Springer INdAM Ser. 46, 125-137 (2021). MSC: 35Q92 92C05 92C40 78A40 35A15 35A23 35B27 35B45 65M60 65M06 65N30 65M12 PDFBibTeX XMLCite \textit{F. Daví}, Springer INdAM Ser. 46, 125--137 (2021; Zbl 1487.35376) Full Text: DOI arXiv
Caruso, Giovanni Mathematical modeling of the rod phototransduction process. (English) Zbl 1487.35374 Vespri, Vincenzo (ed.) et al., Harnack inequalities and nonlinear operators. Proceedings of the INdAM conference to celebrate the 70th birthday of Emmanuele DiBenedetto. Cham: Springer. Springer INdAM Ser. 46, 93-124 (2021). MSC: 35Q92 92C05 92C40 78A40 35A23 35B45 35B27 65M60 65M06 65N30 PDFBibTeX XMLCite \textit{G. Caruso}, Springer INdAM Ser. 46, 93--124 (2021; Zbl 1487.35374) Full Text: DOI
Lopez-Martinez, Montse; Mercier, Gwenael; Sadiq, Kamran; Scherzer, Otmar; Schneider, Magdalena; Schotland, John C.; Schütz, Gerhard J.; Telschow, Roger Inverse problems of single molecule localization microscopy. (English) Zbl 1487.35358 Kaltenbacher, Barbara (ed.) et al., Time-dependent problems in imaging and parameter identification. Cham: Springer. 323-376 (2021). MSC: 35Q60 78A46 78A70 78A05 92C55 92C37 92C40 35R30 PDFBibTeX XMLCite \textit{M. Lopez-Martinez} et al., in: Time-dependent problems in imaging and parameter identification. Cham: Springer. 323--376 (2021; Zbl 1487.35358) Full Text: DOI arXiv
Strazzullo, Maria; Zainib, Zakia; Ballarin, Francesco; Rozza, Gianluigi Reduced order methods for parametrized non-linear and time dependent optimal flow control problems, towards applications in biomedical and environmental sciences. (English) Zbl 1478.49017 Vermolen, Fred J. (ed.) et al., Numerical mathematics and advanced applications. ENUMATH 2019. Proceedings of the European conference, Egmond aan Zee, The Netherlands, September 30 – October 4, 2019. Cham: Springer. Lect. Notes Comput. Sci. Eng. 139, 841-850 (2021). MSC: 49K20 49J20 35Q30 49S05 92C40 PDFBibTeX XMLCite \textit{M. Strazzullo} et al., Lect. Notes Comput. Sci. Eng. 139, 841--850 (2021; Zbl 1478.49017) Full Text: DOI arXiv
Takeshita, Jun-Ichi; Toyoda, Akinobu; Tani, Hidenori; Endo, Yasunori; Miyamoto, Sadaaki Classification of chemical compounds based on the correlation between in vitro gene expression profiles. (English) Zbl 1473.62373 Bull. Inf. Cybern. 53, No. 4, 1-14 (2021). MSC: 62P10 62H30 92C40 PDFBibTeX XMLCite \textit{J.-I. Takeshita} et al., Bull. Inf. Cybern. 53, No. 4, 1--14 (2021; Zbl 1473.62373) Full Text: DOI arXiv
Yang, Juenu; Yan, Fang; Liu, Haihong Dynamic behavior of the p53-Mdm2 core module under the action of drug Nutlin and dual delays. (English) Zbl 1471.92132 Math. Biosci. Eng. 18, No. 4, 3448-3468 (2021). MSC: 92C40 92C42 PDFBibTeX XMLCite \textit{J. Yang} et al., Math. Biosci. Eng. 18, No. 4, 3448--3468 (2021; Zbl 1471.92132) Full Text: DOI
Guo, Wenhan; Xie, Yixin; Lopez-Hernandez, Alan E.; Sun, Shengjie; Li, Lin Electrostatic features for nucleocapsid proteins of SARS-CoV and SARS-CoV-2. (English) Zbl 1471.92125 Math. Biosci. Eng. 18, No. 3, 2372-2383 (2021). MSC: 92C40 PDFBibTeX XMLCite \textit{W. Guo} et al., Math. Biosci. Eng. 18, No. 3, 2372--2383 (2021; Zbl 1471.92125) Full Text: DOI
Wang, Siwen; Alexov, Emil; Zhao, Shan On regularization of charge singularities in solving the Poisson-Boltzmann equation with a smooth solute-solvent boundary. (English) Zbl 1471.92131 Math. Biosci. Eng. 18, No. 2, 1370-1405 (2021). MSC: 92C40 35Q92 PDFBibTeX XMLCite \textit{S. Wang} et al., Math. Biosci. Eng. 18, No. 2, 1370--1405 (2021; Zbl 1471.92131) Full Text: DOI
Song, Linlu; Ning, Shangbo; Hou, Jinxuan; Zhao, Yunjie Performance of protein-ligand docking with CDK4/6 inhibitors: a case study. (English) Zbl 1471.92127 Math. Biosci. Eng. 18, No. 1, 456-470 (2021). MSC: 92C40 92C32 PDFBibTeX XMLCite \textit{L. Song} et al., Math. Biosci. Eng. 18, No. 1, 456--470 (2021; Zbl 1471.92127) Full Text: DOI
Giovanini, Guilherme; Sabino, Alan U.; Barros, Luciana R. C.; Ramos, Alexandre F. Correction to: “A comparative analysis of noise properties of stochastic binary models for a self-repressing and for an externally regulating gene”. (English) Zbl 1472.92101 Math. Biosci. Eng. 18, No. 1, 300-304 (2021). MSC: 92C40 60H30 PDFBibTeX XMLCite \textit{G. Giovanini} et al., Math. Biosci. Eng. 18, No. 1, 300--304 (2021; Zbl 1472.92101) Full Text: DOI
Behr, Nicolas; Krivine, Jean; Andersen, Jakob L.; Merkle, Daniel Rewriting theory for the life sciences: a unifying theory of CTMC semantics. (English) Zbl 1517.68153 Theor. Comput. Sci. 884, 68-115 (2021). MSC: 68Q42 60J28 92C40 PDFBibTeX XMLCite \textit{N. Behr} et al., Theor. Comput. Sci. 884, 68--115 (2021; Zbl 1517.68153) Full Text: DOI arXiv
Joshi, Badal; Craciun, Gheorghe Autocatalytic networks: an intimate relation between network topology and dynamics. (English) Zbl 1471.92126 SIAM J. Appl. Math. 81, No. 4, 1623-1644 (2021). MSC: 92C40 92C42 37N25 PDFBibTeX XMLCite \textit{B. Joshi} and \textit{G. Craciun}, SIAM J. Appl. Math. 81, No. 4, 1623--1644 (2021; Zbl 1471.92126) Full Text: DOI arXiv
Schonfeld, Ethan; Schonfeld, Elan; Schonfeld, Dan Autocatalytic-protection for an unknown locus CRISPR-cas countermeasure for undesired mutagenic chain reactions. (English) Zbl 1467.92135 J. Theor. Biol. 528, Article ID 110831, 6 p. (2021). MSC: 92D10 92C40 PDFBibTeX XMLCite \textit{E. Schonfeld} et al., J. Theor. Biol. 528, Article ID 110831, 6 p. (2021; Zbl 1467.92135) Full Text: DOI DOI
Tupper, Andrew S.; Higgs, Paul G. Rolling-circle and strand-displacement mechanisms for non-enzymatic RNA replication at the time of the origin of life. (English) Zbl 1470.92121 J. Theor. Biol. 527, Article ID 110822, 12 p. (2021). MSC: 92C40 92C45 PDFBibTeX XMLCite \textit{A. S. Tupper} and \textit{P. G. Higgs}, J. Theor. Biol. 527, Article ID 110822, 12 p. (2021; Zbl 1470.92121) Full Text: DOI
Zhang, Ruqiang; Gonze, Didier Stochastic simulation of a model for circadian rhythms in plants. (English) Zbl 1470.92034 J. Theor. Biol. 527, Article ID 110790, 13 p. (2021). MSC: 92B25 92C80 PDFBibTeX XMLCite \textit{R. Zhang} and \textit{D. Gonze}, J. Theor. Biol. 527, Article ID 110790, 13 p. (2021; Zbl 1470.92034) Full Text: DOI
Musial, Monika (ed.); Hoggan, Philip E. (ed.) New electron correlation methods and their applications, and use of atomic orbitals with exponential asymptotes. (English) Zbl 1470.92012 Advances in Quantum Chemistry 83. Amsterdam: Elsevier/Academic Press (ISBN 978-0-12-823546-1/hbk; 978-0-12-823547-8/ebook). xvii, 334 p. (2021). MSC: 92-06 92E10 00B15 PDFBibTeX XMLCite \textit{M. Musial} (ed.) and \textit{P. E. Hoggan} (ed.), New electron correlation methods and their applications, and use of atomic orbitals with exponential asymptotes. Amsterdam: Elsevier/Academic Press (2021; Zbl 1470.92012) Full Text: Link
Barbuti, Roberto; Gori, Roberta; Milazzo, Paolo Encoding Boolean networks into reaction systems for investigating causal dependencies in gene regulation. (English) Zbl 1512.92024 Theor. Comput. Sci. 881, 3-24 (2021). MSC: 92C40 92C42 68Q07 PDFBibTeX XMLCite \textit{R. Barbuti} et al., Theor. Comput. Sci. 881, 3--24 (2021; Zbl 1512.92024) Full Text: DOI
Abdelkawy, M. A. Numerical technique for solving fractional-order of IVGTT glucose-insulin interaction. (English) Zbl 1478.92059 Appl. Appl. Math. 16, No. 1, 739-751 (2021). MSC: 92C40 34A34 34A08 PDFBibTeX XMLCite \textit{M. A. Abdelkawy}, Appl. Appl. Math. 16, No. 1, 739--751 (2021; Zbl 1478.92059) Full Text: Link
Puchhammer, Florian; Ben Abdellah, Amal; L’Ecuyer, Pierre Variance reduction with array-RQMC for tau-leaping simulation of stochastic biological and chemical reaction networks. (English) Zbl 1470.92125 Bull. Math. Biol. 83, No. 8, Paper No. 91, 31 p. (2021). MSC: 92C42 92C40 92E20 60J22 65C05 PDFBibTeX XMLCite \textit{F. Puchhammer} et al., Bull. Math. Biol. 83, No. 8, Paper No. 91, 31 p. (2021; Zbl 1470.92125) Full Text: DOI arXiv Link
Fujita, Shinsaku Mathematical stereochemistry. 2nd edition. (English) Zbl 1482.92003 Berlin: De Gruyter (ISBN 978-3-11-072818-7/hbk; 978-3-11-072823-1/ebook). xxii, 507 p. (2021). Reviewer: Franka Miriam Brückler (Zagreb) MSC: 92-02 92E10 20A99 PDFBibTeX XMLCite \textit{S. Fujita}, Mathematical stereochemistry. 2nd edition. Berlin: De Gruyter (2021; Zbl 1482.92003) Full Text: DOI
Tang, Xiaoxian; Xu, Hao Multistability of small reaction networks. (English) Zbl 1469.92051 SIAM J. Appl. Dyn. Syst. 20, No. 2, 608-635 (2021). MSC: 92C40 92C45 92C42 PDFBibTeX XMLCite \textit{X. Tang} and \textit{H. Xu}, SIAM J. Appl. Dyn. Syst. 20, No. 2, 608--635 (2021; Zbl 1469.92051) Full Text: DOI arXiv
Yang, Chang; Tine, Léon Matar Analysis and numerical simulations of a reaction-diffusion model with fixed active bodies. (English) Zbl 1467.92079 SIAM J. Appl. Math. 81, No. 4, 1339-1360 (2021). MSC: 92C40 92C32 35K57 65M12 PDFBibTeX XMLCite \textit{C. Yang} and \textit{L. M. Tine}, SIAM J. Appl. Math. 81, No. 4, 1339--1360 (2021; Zbl 1467.92079) Full Text: DOI
Safonov, Dmitry A.; Vanag, Vladimir K. Oscillatory microcells connected on a ring by chemical waves. (English) Zbl 1465.92041 Chaos 31, No. 6, 063134, 14 p. (2021). MSC: 92C40 92C42 34C15 34C60 PDFBibTeX XMLCite \textit{D. A. Safonov} and \textit{V. K. Vanag}, Chaos 31, No. 6, 063134, 14 p. (2021; Zbl 1465.92041) Full Text: DOI
Wu, Hao; Ying, Jinyong; Zou, Qingsong Finite volume element method for predicting electrostatics of a biomolecule immersed in an ionic solvent. (English) Zbl 1469.65160 Int. J. Numer. Anal. Model. 18, No. 2, 190-202 (2021). Reviewer: Abdallah Bradji (Annaba) MSC: 65N08 92-08 78A30 78A70 76T20 92C40 35Q20 35Q60 PDFBibTeX XMLCite \textit{H. Wu} et al., Int. J. Numer. Anal. Model. 18, No. 2, 190--202 (2021; Zbl 1469.65160) Full Text: Link
Czapla, Dawid; Horbacz, Katarzyna; Wojewódka-Ściążko, Hanna The Strassen invariance principle for certain non-stationary Markov-Feller chains. (English) Zbl 1472.35396 Asymptotic Anal. 121, No. 1, 1-34 (2021). MSC: 35Q92 92C40 60F05 60F17 60F15 60J05 60J35 PDFBibTeX XMLCite \textit{D. Czapla} et al., Asymptotic Anal. 121, No. 1, 1--34 (2021; Zbl 1472.35396) Full Text: DOI arXiv
Wang, Yangyang; Huang, Zhengyuan; Antoneli, Fernando; Golubitsky, Martin The structure of infinitesimal homeostasis in input-output networks. (English) Zbl 1467.92083 J. Math. Biol. 82, No. 7, Paper No. 62, 43 p. (2021). MSC: 92C42 92C40 PDFBibTeX XMLCite \textit{Y. Wang} et al., J. Math. Biol. 82, No. 7, Paper No. 62, 43 p. (2021; Zbl 1467.92083) Full Text: DOI arXiv
Nouaoura, Sarra; Abdellatif, Nahla; Fekih-Salem, Radhouane; Sari, Tewfik Mathematical analysis of a three-tiered model of anaerobic digestion. (English) Zbl 1471.34095 SIAM J. Appl. Math. 81, No. 3, 1264-1286 (2021). MSC: 34C60 34C05 34C23 34D20 92C40 PDFBibTeX XMLCite \textit{S. Nouaoura} et al., SIAM J. Appl. Math. 81, No. 3, 1264--1286 (2021; Zbl 1471.34095) Full Text: DOI
Yousefnezhad, Mohsen; Kao, Chiu-Yen; Mohammadi, Seyyed Abbas Optimal chemotherapy for brain tumor growth in a reaction-diffusion model. (English) Zbl 1472.92098 SIAM J. Appl. Math. 81, No. 3, 1077-1097 (2021). MSC: 92C37 35Q92 35K57 49J20 49M05 92C40 PDFBibTeX XMLCite \textit{M. Yousefnezhad} et al., SIAM J. Appl. Math. 81, No. 3, 1077--1097 (2021; Zbl 1472.92098) Full Text: DOI
Hernandez, Bryan S.; De la Cruz, Ralph John L. Independent decompositions of chemical reaction networks. (English) Zbl 1467.92256 Bull. Math. Biol. 83, No. 7, Paper No. 76, 23 p. (2021). MSC: 92E20 92C40 92C42 92D30 PDFBibTeX XMLCite \textit{B. S. Hernandez} and \textit{R. J. L. De la Cruz}, Bull. Math. Biol. 83, No. 7, Paper No. 76, 23 p. (2021; Zbl 1467.92256) Full Text: DOI arXiv
Assaf, George; Heiner, Monika; Liu, Fei Colouring fuzziness for systems biology. (English) Zbl 1507.92030 Theor. Comput. Sci. 875, 52-64 (2021). MSC: 92C42 92C40 93C65 93C42 PDFBibTeX XMLCite \textit{G. Assaf} et al., Theor. Comput. Sci. 875, 52--64 (2021; Zbl 1507.92030) Full Text: DOI
Nouaoura, Sarra; Fekih-Salem, Radhouane; Abdellatif, Nahla; Sari, Tewfik Mathematical analysis of a three-tiered food-web in the chemostat. (English) Zbl 1471.34096 Discrete Contin. Dyn. Syst., Ser. B 26, No. 10, 5601-5625 (2021). MSC: 34C60 34C05 34D20 34C23 92C40 PDFBibTeX XMLCite \textit{S. Nouaoura} et al., Discrete Contin. Dyn. Syst., Ser. B 26, No. 10, 5601--5625 (2021; Zbl 1471.34096) Full Text: DOI
Zhang, Zhenquan; Chen, Meiling; Zhang, Jiajun; Zhou, Tianshou Analysis of non-Markovian effects in generalized birth-death models. (English) Zbl 1469.60279 Discrete Contin. Dyn. Syst., Ser. B 26, No. 7, 3717-3735 (2021). MSC: 60J85 92C40 PDFBibTeX XMLCite \textit{Z. Zhang} et al., Discrete Contin. Dyn. Syst., Ser. B 26, No. 7, 3717--3735 (2021; Zbl 1469.60279) Full Text: DOI
De Maesschalck, P.; Kiss, G.; Kovacs, A. Relaxation oscillations and canards of a regulated two-gene model. (English) Zbl 1466.92055 J. Math. Anal. Appl. 502, No. 1, Article ID 125144, 18 p. (2021). MSC: 92C40 92C42 34D15 PDFBibTeX XMLCite \textit{P. De Maesschalck} et al., J. Math. Anal. Appl. 502, No. 1, Article ID 125144, 18 p. (2021; Zbl 1466.92055) Full Text: DOI
FitzGerald, Cody E.; Keener, James P. A systematic search for switch-like behavior in type II toxin-antitoxin systems. (English) Zbl 1466.92061 J. Math. Biol. 82, No. 7, Paper No. 60, 29 p. (2021). MSC: 92C42 92C40 34C60 PDFBibTeX XMLCite \textit{C. E. FitzGerald} and \textit{J. P. Keener}, J. Math. Biol. 82, No. 7, Paper No. 60, 29 p. (2021; Zbl 1466.92061) Full Text: DOI
Tang, Xiaoxian; Wang, Jie Bistability of sequestration networks. (English) Zbl 1466.92058 Discrete Contin. Dyn. Syst., Ser. B 26, No. 3, 1337-1357 (2021). MSC: 92C40 92C45 92C42 PDFBibTeX XMLCite \textit{X. Tang} and \textit{J. Wang}, Discrete Contin. Dyn. Syst., Ser. B 26, No. 3, 1337--1357 (2021; Zbl 1466.92058) Full Text: DOI arXiv
Vundavilli, Haswanth; Tripathi, Lokesh P.; Datta, Aniruddha; Mizuguchi, Kenji Network modeling and inference of peroxisome proliferator-activated receptor pathway in high fat diet-linked obesity. (English) Zbl 1465.92045 J. Theor. Biol. 519, Article ID 110647, 6 p. (2021). MSC: 92C42 92C40 PDFBibTeX XMLCite \textit{H. Vundavilli} et al., J. Theor. Biol. 519, Article ID 110647, 6 p. (2021; Zbl 1465.92045) Full Text: DOI DOI
Devi, Anju; Jakhar, Manjeet Analysis of concentration of \(\mathrm{Ca^{2+}} \) arising in astrocytes cell. (English) Zbl 1468.35212 Int. J. Appl. Comput. Math. 7, No. 1, Paper No. 11, 9 p. (2021). MSC: 35Q92 26A33 33E50 44A15 49K20 92C20 92C40 35R11 PDFBibTeX XMLCite \textit{A. Devi} and \textit{M. Jakhar}, Int. J. Appl. Comput. Math. 7, No. 1, Paper No. 11, 9 p. (2021; Zbl 1468.35212) Full Text: DOI
Lei, Jinzhi Systems biology. Modeling, analysis, and simulation. (English) Zbl 1464.92001 Lecture Notes on Mathematical Modelling in the Life Sciences. Cham: Springer (ISBN 978-3-030-73032-1/pbk; 978-3-030-73033-8/ebook). xii, 308 p. (2021). MSC: 92-02 92C42 92C45 92C40 92C15 92C37 34K20 60H10 92-10 PDFBibTeX XMLCite \textit{J. Lei}, Systems biology. Modeling, analysis, and simulation. Cham: Springer (2021; Zbl 1464.92001) Full Text: DOI
Bressloff, Paul C. Stochastic processes in cell biology. Volume I. 2nd edition. (English) Zbl 1482.92001 Interdisciplinary Applied Mathematics 41. Cham: Springer (ISBN 978-3-030-72514-3/hbk; 978-3-030-72515-0/ebook). xxxii, 748 p. (2021). MSC: 92-01 92C37 92C17 92C40 60G50 60J70 60J85 60H10 PDFBibTeX XMLCite \textit{P. C. Bressloff}, Stochastic processes in cell biology. Volume I. 2nd edition. Cham: Springer (2021; Zbl 1482.92001) Full Text: DOI
Wang, Wei; Feng, Zhaosheng Influence of environmental pollution to a waterborne pathogen model: global dynamics and asymptotic profiles. (English) Zbl 1468.35219 Commun. Nonlinear Sci. Numer. Simul. 99, Article ID 105821, 17 p. (2021). MSC: 35Q92 92D30 92D25 92C40 35B40 35K57 37C75 PDFBibTeX XMLCite \textit{W. Wang} and \textit{Z. Feng}, Commun. Nonlinear Sci. Numer. Simul. 99, Article ID 105821, 17 p. (2021; Zbl 1468.35219) Full Text: DOI
Rajan, R. Sundara; Shantrinal, A. Arul; Kumar, K. Jagadeesh; Rajalaxmi, T. M.; Rajasingh, Indra; Balasubramanian, Krishnan Biochemical and phylogenetic networks. II: \(X\)-trees and phylogenetic trees. (English) Zbl 1462.92030 J. Math. Chem. 59, No. 3, 699-718 (2021). MSC: 92C40 92D15 05C90 PDFBibTeX XMLCite \textit{R. S. Rajan} et al., J. Math. Chem. 59, No. 3, 699--718 (2021; Zbl 1462.92030) Full Text: DOI
Rajan, R. Sundara; Kumar, K. Jagadeesh; Shantrinal, A. Arul; Rajalaxmi, T. M.; Rajasingh, Indra; Balasubramanian, Krishnan Biochemical and phylogenetic networks. I: Hypertrees and corona products. (English) Zbl 1462.92029 J. Math. Chem. 59, No. 3, 676-698 (2021). MSC: 92C40 92D15 05C90 PDFBibTeX XMLCite \textit{R. S. Rajan} et al., J. Math. Chem. 59, No. 3, 676--698 (2021; Zbl 1462.92029) Full Text: DOI
Jerez, Silvia; Pliego, Emilene; Solis, Francisco J. Strange attractors in discrete slow power-law models of bone remodeling. (English) Zbl 1459.92031 Chaos 31, No. 3, 033109, 9 p. (2021). MSC: 92C40 92C42 37N25 37D45 PDFBibTeX XMLCite \textit{S. Jerez} et al., Chaos 31, No. 3, 033109, 9 p. (2021; Zbl 1459.92031) Full Text: DOI
Olsen, Lars F.; Lunding, Anita Chaos in the peroxidase-oxidase oscillator. (English) Zbl 1458.92029 Chaos 31, No. 1, 013119, 13 p. (2021). MSC: 92C40 92C42 34C60 34C28 PDFBibTeX XMLCite \textit{L. F. Olsen} and \textit{A. Lunding}, Chaos 31, No. 1, 013119, 13 p. (2021; Zbl 1458.92029) Full Text: DOI
Chesneau, Christophe; Sharma, Vikas Kumar; Bakouch, Hassan S. Extended Topp-Leone family of distributions as an alternative to beta and Kumaraswamy type distributions: application to glycosaminoglycans concentration level in urine. (English) Zbl 1465.60014 Int. J. Biomath. 14, No. 2, Article ID 2050088, 23 p. (2021). MSC: 60E05 62E15 92C40 PDFBibTeX XMLCite \textit{C. Chesneau} et al., Int. J. Biomath. 14, No. 2, Article ID 2050088, 23 p. (2021; Zbl 1465.60014) Full Text: DOI
Blanchini, Franco; Giordano, Giulia Structural analysis in biology: a control-theoretic approach. (English) Zbl 1460.92072 Automatica 126, Article ID 109376, 23 p. (2021). MSC: 92C40 92C42 34C60 93B70 93B35 PDFBibTeX XMLCite \textit{F. Blanchini} and \textit{G. Giordano}, Automatica 126, Article ID 109376, 23 p. (2021; Zbl 1460.92072) Full Text: DOI
Li, Rui; Zhang, Qi; Chu, Tianguang On quotients of Boolean control networks. (English) Zbl 1461.93185 Automatica 125, Article ID 99401, 10 p. (2021). MSC: 93B70 93C29 93B25 92C40 PDFBibTeX XMLCite \textit{R. Li} et al., Automatica 125, Article ID 99401, 10 p. (2021; Zbl 1461.93185) Full Text: DOI arXiv
Keng, Ying Ying; Kwa, Kiam Heong; Ratnavelu, Kurunathan Centrality analysis in a drug network and its application to drug repositioning. (English) Zbl 1508.92091 Appl. Math. Comput. 395, Article ID 125870, 14 p. (2021). MSC: 92C42 91D30 92C40 PDFBibTeX XMLCite \textit{Y. Y. Keng} et al., Appl. Math. Comput. 395, Article ID 125870, 14 p. (2021; Zbl 1508.92091) Full Text: DOI
Ghosh, P.; Pateras, J.; Rangachari, V.; Vaidya, A. A network thermodynamic analysis of amyloid aggregation along competing pathways. (English) Zbl 1508.92051 Appl. Math. Comput. 393, Article ID 125778, 17 p. (2021). MSC: 92C32 92C42 92C40 92C50 34A34 PDFBibTeX XMLCite \textit{P. Ghosh} et al., Appl. Math. Comput. 393, Article ID 125778, 17 p. (2021; Zbl 1508.92051) Full Text: DOI
Milton, John; Ohira, Toru Mathematics as a laboratory tool. Dynamics, delays and noise. 2nd edition. (English) Zbl 1470.92002 Cham: Springer (ISBN 978-3-030-69578-1/hbk; 978-3-030-69581-1/pbk; 978-3-030-69579-8/ebook). xxv, 638 p. (2021). MSC: 92-01 92B05 92C20 92D25 92C40 37N25 60H30 93C95 PDFBibTeX XMLCite \textit{J. Milton} and \textit{T. Ohira}, Mathematics as a laboratory tool. Dynamics, delays and noise. 2nd edition. Cham: Springer (2021; Zbl 1470.92002) Full Text: DOI
Zhang, Shuang; Chen, Kyle Yu; Zou, Xiaoqin Carbohydrate-protein interactions: advances and challenges. (English) Zbl 1469.92052 Commun. Inf. Syst. 21, No. 1, 147-163 (2021). MSC: 92C40 92-02 PDFBibTeX XMLCite \textit{S. Zhang} et al., Commun. Inf. Syst. 21, No. 1, 147--163 (2021; Zbl 1469.92052) Full Text: DOI
Jones, Benjamin; Ullah, Sheik Ahmed; Wang, Siwen; Zhao, Shan Adaptive pseudo-time methods for the Poisson-Boltzmann equation with Eulerian solvent excluded surface. (English) Zbl 1469.92049 Commun. Inf. Syst. 21, No. 1, 85-123 (2021). MSC: 92C40 65N99 35Q92 PDFBibTeX XMLCite \textit{B. Jones} et al., Commun. Inf. Syst. 21, No. 1, 85--123 (2021; Zbl 1469.92049) Full Text: DOI arXiv
Hawkins, Elizabeth; Shao, Yuanzhen; Chen, Zhan New variational analysis on the sharp interface of multiscale implicit solvation: general expressions and applications. (English) Zbl 1469.92048 Commun. Inf. Syst. 21, No. 1, 37-64 (2021). MSC: 92C40 58E12 PDFBibTeX XMLCite \textit{E. Hawkins} et al., Commun. Inf. Syst. 21, No. 1, 37--64 (2021; Zbl 1469.92048) Full Text: DOI
Stolerman, Lucas M.; Ghosh, Pradipta; Rangamani, Padmini Stability analysis of a signaling circuit with dual species of gtpase switches. (English) Zbl 1460.92082 Bull. Math. Biol. 83, No. 4, Paper No. 34, 40 p. (2021). MSC: 92C40 34D20 PDFBibTeX XMLCite \textit{L. M. Stolerman} et al., Bull. Math. Biol. 83, No. 4, Paper No. 34, 40 p. (2021; Zbl 1460.92082) Full Text: DOI arXiv Link
Conradi, Carsten; Obatake, Nida; Shiu, Anne; Tang, Xiaoxian Dynamics of ERK regulation in the processive limit. (English) Zbl 1460.92073 J. Math. Biol. 82, No. 4, Paper No. 32, 28 p. (2021). MSC: 92C40 92C45 PDFBibTeX XMLCite \textit{C. Conradi} et al., J. Math. Biol. 82, No. 4, Paper No. 32, 28 p. (2021; Zbl 1460.92073) Full Text: DOI arXiv
Xu, Xining; Zhang, Yunxin Motility and energetics of randomly flashing ratchets. (English) Zbl 1504.82038 J. Stat. Mech. Theory Exp. 2021, No. 3, Article ID 033503, 21 p. (2021). MSC: 82C31 60J70 92C45 PDFBibTeX XMLCite \textit{X. Xu} and \textit{Y. Zhang}, J. Stat. Mech. Theory Exp. 2021, No. 3, Article ID 033503, 21 p. (2021; Zbl 1504.82038) Full Text: DOI arXiv
Karmakar, Rajesh; Das, Amit Kumar Effect of transcription reinitiation in stochastic gene expression. (English) Zbl 1504.92046 J. Stat. Mech. Theory Exp. 2021, No. 3, Article ID 033502, 25 p. (2021). MSC: 92C40 PDFBibTeX XMLCite \textit{R. Karmakar} and \textit{A. K. Das}, J. Stat. Mech. Theory Exp. 2021, No. 3, Article ID 033502, 25 p. (2021; Zbl 1504.92046) Full Text: DOI arXiv
Schütz, G. M. Molecular motor traffic with a slow binding site. (English) Zbl 1460.92081 J. Theor. Biol. 518, Article ID 110644, 10 p. (2021). MSC: 92C40 PDFBibTeX XMLCite \textit{G. M. Schütz}, J. Theor. Biol. 518, Article ID 110644, 10 p. (2021; Zbl 1460.92081) Full Text: DOI
Cloete, Ielyaas; Corrêa-Velloso, Juliana C.; Bartlett, Paula J.; Kirk, Vivien; Thomas, Andrew P.; Sneyd, James A tale of two receptors. (English) Zbl 1460.92064 J. Theor. Biol. 518, Article ID 110629, 18 p. (2021). MSC: 92C37 92C40 PDFBibTeX XMLCite \textit{I. Cloete} et al., J. Theor. Biol. 518, Article ID 110629, 18 p. (2021; Zbl 1460.92064) Full Text: DOI
Otero, Marcelo; Sarno, Silvina N.; Acebedo, Sofía L.; Ramírez, Javier A. Tracing molecular properties throughout evolution: a chemoinformatic approach. (English) Zbl 1460.92079 J. Theor. Biol. 515, Article ID 110601, 10 p. (2021). MSC: 92C40 62P15 PDFBibTeX XMLCite \textit{M. Otero} et al., J. Theor. Biol. 515, Article ID 110601, 10 p. (2021; Zbl 1460.92079) Full Text: DOI DOI
Milzman, Jesse; Sheng, Wanqiang; Levy, Doron Modeling LSD1-mediated tumor stagnation. (English) Zbl 1457.92080 Bull. Math. Biol. 83, No. 2, Paper No. 15, 29 p. (2021). MSC: 92C50 92C40 34K60 PDFBibTeX XMLCite \textit{J. Milzman} et al., Bull. Math. Biol. 83, No. 2, Paper No. 15, 29 p. (2021; Zbl 1457.92080) Full Text: DOI
Filatova, Tatiana; Popovic, Nikola; Grima, Ramon Statistics of nascent and mature RNA fluctuations in a stochastic model of transcriptional initiation, elongation, pausing, and termination. (English) Zbl 1460.92075 Bull. Math. Biol. 83, No. 1, Paper No. 3, 62 p. (2021). MSC: 92C40 60H30 PDFBibTeX XMLCite \textit{T. Filatova} et al., Bull. Math. Biol. 83, No. 1, Paper No. 3, 62 p. (2021; Zbl 1460.92075) Full Text: DOI
Biswas, Debojyoti; Iglesias, Pablo A. Sensitivity minimization, biological homeostasis and information theory. (English) Zbl 1460.92084 Biol. Cybern. 115, No. 1, 103-113 (2021). MSC: 92C42 92C40 PDFBibTeX XMLCite \textit{D. Biswas} and \textit{P. A. Iglesias}, Biol. Cybern. 115, No. 1, 103--113 (2021; Zbl 1460.92084) Full Text: DOI
Robin, François; Van Gorp, Anne; Véber, Amandine The role of mode switching in a population of actin polymers with constraints. (English) Zbl 1457.92025 J. Math. Biol. 82, No. 3, Paper No. 11, 44 p. (2021). MSC: 92C10 92C40 60J28 PDFBibTeX XMLCite \textit{F. Robin} et al., J. Math. Biol. 82, No. 3, Paper No. 11, 44 p. (2021; Zbl 1457.92025) Full Text: DOI HAL
Klobusicky, Joseph J.; Fricks, John; Kramer, Peter R. Correction to: “Effective behavior of cooperative and nonidentical molecular motors”. (English) Zbl 1466.92057 Res. Math. Sci. 8, No. 1, Paper No. 13, 2 p. (2021). MSC: 92C40 65C30 PDFBibTeX XMLCite \textit{J. J. Klobusicky} et al., Res. Math. Sci. 8, No. 1, Paper No. 13, 2 p. (2021; Zbl 1466.92057) Full Text: DOI
Gao, Chunyan; Chen, Fangqi Oscillatory behaviors of delayed p53 regulatory network with microRNA 192 in DNA damage response. (English) Zbl 1459.92030 Int. J. Bifurcation Chaos Appl. Sci. Eng. 31, No. 2, Article ID 2150020, 27 p. (2021). MSC: 92C40 92C42 92D10 PDFBibTeX XMLCite \textit{C. Gao} and \textit{F. Chen}, Int. J. Bifurcation Chaos Appl. Sci. Eng. 31, No. 2, Article ID 2150020, 27 p. (2021; Zbl 1459.92030) Full Text: DOI
Vishwakarma, Gajendra K.; Thomas, Abin; Bhattacharjee, Atanu A weight function method for selection of proteins to predict an outcome using protein expression data. (English) Zbl 1461.62195 J. Comput. Appl. Math. 391, Article ID 113465, 10 p. (2021). MSC: 62P10 62M20 62D05 92C40 PDFBibTeX XMLCite \textit{G. K. Vishwakarma} et al., J. Comput. Appl. Math. 391, Article ID 113465, 10 p. (2021; Zbl 1461.62195) Full Text: DOI
Wendler, Wolf-Michael Mathematics and codons. 2nd edition. (English) Zbl 1462.92003 Berichte aus der Mathematik. Aachen: Shaker Verlag (ISBN 978-3-8440-7858-9/hbk). xxvii, 716 p. (2021). MSC: 92-02 92C40 92D10 92D20 PDFBibTeX XMLCite \textit{W.-M. Wendler}, Mathematics and codons. 2nd edition. Aachen: Shaker Verlag (2021; Zbl 1462.92003)
Fiedler, Bernold Global Hopf bifurcation in networks with fast feedback cycles. (English) Zbl 1454.34060 Discrete Contin. Dyn. Syst., Ser. S 14, No. 1, 177-203 (2021). MSC: 34C15 37G15 05C38 92C40 92C42 PDFBibTeX XMLCite \textit{B. Fiedler}, Discrete Contin. Dyn. Syst., Ser. S 14, No. 1, 177--203 (2021; Zbl 1454.34060) Full Text: DOI arXiv
Lichtblau, Daniel Symbolic analysis of multiple steady states in a MAPK chemical reaction network. (English) Zbl 1457.92062 J. Symb. Comput. 105, 118-144 (2021). MSC: 92C40 92C42 92C45 PDFBibTeX XMLCite \textit{D. Lichtblau}, J. Symb. Comput. 105, 118--144 (2021; Zbl 1457.92062) Full Text: DOI
Ei, Shin-Ichiro; Ishii, Hiroshi; Kondo, Shigeru; Miura, Takashi; Tanaka, Yoshitaro Effective nonlocal kernels on reaction-diffusion networks. (English) Zbl 1457.92066 J. Theor. Biol. 509, Article ID 110496, 18 p. (2021). MSC: 92C42 92C40 35Q92 PDFBibTeX XMLCite \textit{S.-I. Ei} et al., J. Theor. Biol. 509, Article ID 110496, 18 p. (2021; Zbl 1457.92066) Full Text: DOI arXiv
Plunkett, Claire E.; Lawley, Sean D. Bimolecular binding rates for pairs of spherical molecules with small binding sites. (English) Zbl 1458.35430 Multiscale Model. Simul. 19, No. 1, 148-183 (2021). MSC: 35Q92 35B25 35C20 35J05 92C05 92C40 60J65 81V55 82D60 82M31 PDFBibTeX XMLCite \textit{C. E. Plunkett} and \textit{S. D. Lawley}, Multiscale Model. Simul. 19, No. 1, 148--183 (2021; Zbl 1458.35430) Full Text: DOI arXiv
Lu, Yunjiao; Hodara, Pierre; Kervrann, Charles; Trubuil, Alain Probabilistic reconstruction of truncated particle trajectories on a closed surface. (English) Zbl 1512.92023 Multiscale Model. Simul. 19, No. 1, 87-112 (2021). MSC: 92C37 62P10 92C40 PDFBibTeX XMLCite \textit{Y. Lu} et al., Multiscale Model. Simul. 19, No. 1, 87--112 (2021; Zbl 1512.92023) Full Text: DOI arXiv
Dai, Shibin; Promislow, Keith Codimension one minimizers of highly amphiphilic mixtures. (English) Zbl 1460.82015 J. Comput. Appl. Math. 388, Article ID 113320, 17 p. (2021). MSC: 82C24 82M37 82C26 35B40 92C37 35Q92 35Q74 PDFBibTeX XMLCite \textit{S. Dai} and \textit{K. Promislow}, J. Comput. Appl. Math. 388, Article ID 113320, 17 p. (2021; Zbl 1460.82015) Full Text: DOI arXiv
Bhattacharjee, Atanu Bayesian approaches in oncology using R and OpenBUGS. (English) Zbl 1453.62004 Boca Raton, FL: CRC Press (ISBN 978-0-367-35050-5/hbk; 978-0-429-32944-9/ebook). xv, 243 p. (2021). MSC: 62-01 62P10 62F15 62-04 92C50 92C40 PDFBibTeX XMLCite \textit{A. Bhattacharjee}, Bayesian approaches in oncology using R and OpenBUGS. Boca Raton, FL: CRC Press (2021; Zbl 1453.62004) Full Text: DOI
Tourigny, David S. Cooperative metabolic resource allocation in spatially-structured systems. (English) Zbl 1457.92064 J. Math. Biol. 82, No. 1-2, Paper No. 5, 25 p. (2021). MSC: 92C40 92C42 PDFBibTeX XMLCite \textit{D. S. Tourigny}, J. Math. Biol. 82, No. 1--2, Paper No. 5, 25 p. (2021; Zbl 1457.92064) Full Text: DOI arXiv
Brechmann, Pia; Rendall, Alan D. Unbounded solutions of models for glycolysis. (English) Zbl 1457.92057 J. Math. Biol. 82, No. 1-2, Paper No. 1, 23 p. (2021). MSC: 92C40 34C11 37N25 PDFBibTeX XMLCite \textit{P. Brechmann} and \textit{A. D. Rendall}, J. Math. Biol. 82, No. 1--2, Paper No. 1, 23 p. (2021; Zbl 1457.92057) Full Text: DOI arXiv
Thomas, Abin; Vishwakarma, Gajendra K.; Bhattacharjee, Atanu Joint modeling of longitudinal and time-to-event data on multivariate protein biomarkers. (English) Zbl 1448.62189 J. Comput. Appl. Math. 381, Article ID 113016, 10 p. (2021). MSC: 62P10 62N05 62H11 92C40 PDFBibTeX XMLCite \textit{A. Thomas} et al., J. Comput. Appl. Math. 381, Article ID 113016, 10 p. (2021; Zbl 1448.62189) Full Text: DOI
Shen, Ruigang; Zhang, Qianru; Lu, ang Benzhuo An inverse averaging finite element method for solving the size-modified Poisson-Nernst-Planck equations in ion channel simulations. arXiv:2112.01692 Preprint, arXiv:2112.01692 [math.NA] (2021). MSC: 35J61 65N30 92C40 BibTeX Cite \textit{R. Shen} et al., ``An inverse averaging finite element method for solving the size-modified Poisson-Nernst-Planck equations in ion channel simulations'', Preprint, arXiv:2112.01692 [math.NA] (2021) Full Text: arXiv OA License
Zhang, Chuan; Shen, Ziyuan; Wei, Wei; Zhao, Jing; Zhang, Zaichen; You, Xiaohu Molecular computing for Markov chains. (English) Zbl 07802768 Nat. Comput. 19, No. 3, 593-608 (2020). MSC: 68Q07 60J20 92C40 PDFBibTeX XMLCite \textit{C. Zhang} et al., Nat. Comput. 19, No. 3, 593--608 (2020; Zbl 07802768) Full Text: DOI arXiv
Goles, Eric; Lobos, Fabiola; Ruz, Gonzalo A.; Sené, Sylvain Attractor landscapes in Boolean networks with firing memory: a theoretical study applied to genetic networks. (English) Zbl 07802751 Nat. Comput. 19, No. 2, 295-319 (2020). MSC: 92C40 92C42 37B10 37B35 PDFBibTeX XMLCite \textit{E. Goles} et al., Nat. Comput. 19, No. 2, 295--319 (2020; Zbl 07802751) Full Text: DOI arXiv
Condon, Anne; Hajiaghayi, Monir; Kirkpatrick, David; Maňuch, Ján Approximate majority analyses using tri-molecular chemical reaction networks. (English) Zbl 07802747 Nat. Comput. 19, No. 1, 249-270 (2020). MSC: 68Q07 92C40 92C42 PDFBibTeX XMLCite \textit{A. Condon} et al., Nat. Comput. 19, No. 1, 249--270 (2020; Zbl 07802747) Full Text: DOI
Cardelli, Luca; Tribastone, Mirco; Tschaikowski, Max From electric circuits to chemical networks. (English) Zbl 07802746 Nat. Comput. 19, No. 1, 237-248 (2020). MSC: 68Q07 34A09 34A45 92C40 94C05 PDFBibTeX XMLCite \textit{L. Cardelli} et al., Nat. Comput. 19, No. 1, 237--248 (2020; Zbl 07802746) Full Text: DOI arXiv
Saikia, Debashis; Bora, Madhurjya P. Nonlinear model of the firefly flash. (English) Zbl 1516.92011 Nonlinear Dyn. 101, No. 2, 1301-1315 (2020). MSC: 92C40 34C23 PDFBibTeX XMLCite \textit{D. Saikia} and \textit{M. P. Bora}, Nonlinear Dyn. 101, No. 2, 1301--1315 (2020; Zbl 1516.92011) Full Text: DOI arXiv
Sanna, N.; Morelli, G.; Orlandini, S.; Tacconi, M.; Baccarelli, I. SCELib4.0: the new program version for computing molecular properties in the single center approach. (English) Zbl 07678473 Comput. Phys. Commun. 248, Article ID 106970, 12 p. (2020). MSC: 82-XX 92-XX PDFBibTeX XMLCite \textit{N. Sanna} et al., Comput. Phys. Commun. 248, Article ID 106970, 12 p. (2020; Zbl 07678473) Full Text: DOI
Zheng, Size; Javidpour, Leili; Sahimi, Muhammad; Shing, Katherine S.; Nakano, Aiichiro sDMD: an open source program for discontinuous molecular dynamics simulation of protein folding and aggregation. (English) Zbl 07678437 Comput. Phys. Commun. 247, Article ID 106873, 14 p. (2020). MSC: 82-XX 92-XX PDFBibTeX XMLCite \textit{S. Zheng} et al., Comput. Phys. Commun. 247, Article ID 106873, 14 p. (2020; Zbl 07678437) Full Text: DOI
Motamarri, Phani; Das, Sambit; Rudraraju, Shiva; Ghosh, Krishnendu; Davydov, Denis; Gavini, Vikram DFT-FE - a massively parallel adaptive finite-element code for large-scale density functional theory calculations. (English) Zbl 07678420 Comput. Phys. Commun. 246, Article ID 106853, 32 p. (2020). MSC: 92-XX 94-XX PDFBibTeX XMLCite \textit{P. Motamarri} et al., Comput. Phys. Commun. 246, Article ID 106853, 32 p. (2020; Zbl 07678420) Full Text: DOI arXiv
Dabba, Ali; Tari, Abdelkamel; Zouache, Djaafar Multiobjective artificial fish swarm algorithm for multiple sequence alignment. (English) Zbl 1512.92058 INFOR: Inf. Syst. Oper. Res. 58, No. 1, 38-59 (2020). MSC: 92D20 90C59 90C29 PDFBibTeX XMLCite \textit{A. Dabba} et al., INFOR: Inf. Syst. Oper. Res. 58, No. 1, 38--59 (2020; Zbl 1512.92058) Full Text: DOI
Golubyatnikov, Vladimir Petrovich; Gradov, Vyacheslav Sergeevich On non-uniqueness of cycles in some piecewise linear models of circular gene networks. (Russian) Zbl 1508.92081 Mat. Tr. 23, No. 1, 107-122 (2020). MSC: 92C40 92C42 37N25 PDFBibTeX XMLCite \textit{V. P. Golubyatnikov} and \textit{V. S. Gradov}, Mat. Tr. 23, No. 1, 107--122 (2020; Zbl 1508.92081) Full Text: DOI MNR
Frisby, Trevor S.; Langmead, Christopher J. Fold family-regularized Bayesian optimization for directed protein evolution. (English) Zbl 1518.92061 Kingsford, Carl (ed.) et al., 20th international workshop on algorithms in bioinformatics. WABI 2020, September 7–9, 2020, Pisa, Italy, virtual conference. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 172, Article 18, 17 p. (2020). MSC: 92C40 92D20 92-08 PDFBibTeX XMLCite \textit{T. S. Frisby} and \textit{C. J. Langmead}, LIPIcs -- Leibniz Int. Proc. Inform. 172, Article 18, 17 p. (2020; Zbl 1518.92061) Full Text: DOI
Gouveia, Filipe; Lynce, Inês; Monteiro, Pedro T. ModRev – model revision tool for Boolean logical models of biological regulatory networks. (English) Zbl 1506.92032 Abate, Alessandro (ed.) et al., Computational methods in systems biology. 18th international conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12314, 339-348 (2020). MSC: 92C42 92C40 92-08 PDFBibTeX XMLCite \textit{F. Gouveia} et al., Lect. Notes Comput. Sci. 12314, 339--348 (2020; Zbl 1506.92032) Full Text: DOI
Molyneux, Gareth W.; Abate, Alessandro ABC(SMC)\textsuperscript{2}: simultaneous inference and model checking of chemical reaction networks. (English) Zbl 1506.92035 Abate, Alessandro (ed.) et al., Computational methods in systems biology. 18th international conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12314, 255-279 (2020). MSC: 92C42 92C40 92-08 PDFBibTeX XMLCite \textit{G. W. Molyneux} and \textit{A. Abate}, Lect. Notes Comput. Sci. 12314, 255--279 (2020; Zbl 1506.92035) Full Text: DOI
Hemery, Mathieu; Fages, François; Soliman, Sylvain On the complexity of quadratization for polynomial differential equations. (English) Zbl 1506.92033 Abate, Alessandro (ed.) et al., Computational methods in systems biology. 18th international conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12314, 120-140 (2020). MSC: 92C42 92C40 68Q17 PDFBibTeX XMLCite \textit{M. Hemery} et al., Lect. Notes Comput. Sci. 12314, 120--140 (2020; Zbl 1506.92033) Full Text: DOI arXiv
Oarga, Alexandru; Bannerman, Bridget; Júlvez, Jorge Growth dependent computation of chokepoints in metabolic networks. (English) Zbl 1506.92036 Abate, Alessandro (ed.) et al., Computational methods in systems biology. 18th international conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12314, 102-119 (2020). MSC: 92C42 92C40 92-08 PDFBibTeX XMLCite \textit{A. Oarga} et al., Lect. Notes Comput. Sci. 12314, 102--119 (2020; Zbl 1506.92036) Full Text: DOI
Degrand, Élisabeth; Fages, François; Soliman, Sylvain Graphical conditions for rate independence in chemical reaction networks. (English) Zbl 1506.92030 Abate, Alessandro (ed.) et al., Computational methods in systems biology. 18th international conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12314, 61-78 (2020). MSC: 92C42 92C40 34C60 PDFBibTeX XMLCite \textit{É. Degrand} et al., Lect. Notes Comput. Sci. 12314, 61--78 (2020; Zbl 1506.92030) Full Text: DOI arXiv
Bokes, Pavol; Klein, Julia; Petrov, Tatjana Accelerating reactions at the DNA can slow down transient gene expression. (English) Zbl 1506.92023 Abate, Alessandro (ed.) et al., Computational methods in systems biology. 18th international conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12314, 44-60 (2020). MSC: 92C40 34E15 PDFBibTeX XMLCite \textit{P. Bokes} et al., Lect. Notes Comput. Sci. 12314, 44--60 (2020; Zbl 1506.92023) Full Text: DOI
Çelik, Candan; Bokes, Pavol; Singh, Abhyudai Stationary distributions and metastable behaviour for self-regulating proteins with general lifetime distributions. (English) Zbl 1506.92027 Abate, Alessandro (ed.) et al., Computational methods in systems biology. 18th international conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12314, 27-43 (2020). MSC: 92C42 92C40 PDFBibTeX XMLCite \textit{C. Çelik} et al., Lect. Notes Comput. Sci. 12314, 27--43 (2020; Zbl 1506.92027) Full Text: DOI
Danos, Vincent; Heindel, Tobias; Honorato-Zimmer, Ricardo; Stucki, Sandro Rate equations for graphs. (English) Zbl 1506.92024 Abate, Alessandro (ed.) et al., Computational methods in systems biology. 18th international conference, CMSB 2020, Konstanz, Germany, September 23–25, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12314, 3-26 (2020). MSC: 92C40 92C42 05C90 PDFBibTeX XMLCite \textit{V. Danos} et al., Lect. Notes Comput. Sci. 12314, 3--26 (2020; Zbl 1506.92024) Full Text: DOI arXiv
Reyna, Matthew A.; Chitra, Uthsav; Elyanow, Rebecca; Raphael, Benjamin J. NetMix: a network-structured mixture model for reduced-bias estimation of altered subnetworks. (English) Zbl 1500.92035 Schwartz, Russell (ed.), Research in computational molecular biology. 24th annual international conference, RECOMB 2020, Padua, Italy, May 10–13, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12074, 169-185 (2020). MSC: 92C42 92C40 92D20 92-08 PDFBibTeX XMLCite \textit{M. A. Reyna} et al., Lect. Notes Comput. Sci. 12074, 169--185 (2020; Zbl 1500.92035) Full Text: DOI
Dizaji, Kamran Ghasedi; Chen, Wei; Huang, Heng Deep large-scale multi-task learning network for gene expression inference. (English) Zbl 1500.92028 Schwartz, Russell (ed.), Research in computational molecular biology. 24th annual international conference, RECOMB 2020, Padua, Italy, May 10–13, 2020. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12074, 19-36 (2020). MSC: 92C40 68T07 PDFBibTeX XMLCite \textit{K. G. Dizaji} et al., Lect. Notes Comput. Sci. 12074, 19--36 (2020; Zbl 1500.92028) Full Text: DOI