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Efficient algorithms for molecular sequence analysis. (English) Zbl 0633.92005

Efficient (linear time) algorithms are described for identifying global molecular sequence features allowing for errors including repeats, matches between sequences, dyad symmetry pairings, and other sequence patterns. A multiple sequence alignment algorithm is also described. Specific applications are given to hepatitis B viruses and the \(J_ 5-C\) (J, joining; C, constant) region of the immunoglobulin \(\kappa\) gene.

MSC:

92Cxx Physiological, cellular and medical topics
92-08 Computational methods for problems pertaining to biology
68U99 Computing methodologies and applications
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