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Found 131 Documents (Results 1–100)

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Sanders, Peter; Mehlhorn, Kurt; Dietzfelbinger, Martin; Dementiev, Roman
Sequential and parallel algorithms and data structures. The basic toolbox. (English) Zbl 1445.68003
Cham: Springer (ISBN 978-3-030-25208-3/hbk; 978-3-030-25209-0/ebook). xv, 509 p. (2019).
Reviewer: Irina Ioana Mohorianu (Oxford)
MSC:  68-01 68P05 68P10 68Wxx
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\textit{P. Sanders} et al., Sequential and parallel algorithms and data structures. The basic toolbox. Cham: Springer (2019; Zbl 1445.68003)
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Przytycka, Teresa M.
An important connection between network motifs and parsimony models. (English) Zbl 1302.92044
Apostolico, Alberto (ed.) et al., Research in computational molecular biology. 10th annual international conference, RECOMB 2006, Venice, Italy, April 2–5, 2006, Proceedings. Berlin: Springer (ISBN 978-3-540-33295-4/pbk). Lecture Notes in Computer Science 3909. Lecture Notes in Bioinformatics, 321-335 (2006).
MSC:  92C42 92D15 05C90
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\textit{T. M. Przytycka}, Lect. Notes Comput. Sci. 3909, 321--335 (2006; Zbl 1302.92044)
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Christiansen, Chris; Mailund, Thomas; Pedersen, Christian N. S.; Randers, Martin
Quartet distance between general trees. (English) Zbl 1084.68090
Simos, Theodore S. (ed.) et al., ICNAAM 2005. International conference on numerical analysis and applied mathematics 2005. Official conference of the European Society of Computational Methods in Sciences and Engineering (ESCMSE), Rhodes, Greek, September 16–20, 2005. Weinheim: Wiley-VCH (ISBN 3-527-40652-2/hbk). 796-799 (2005).
MSC:  68R10 68Q25 92D15 05C05
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\textit{C. Christiansen} et al., in: ICNAAM 2005. International conference on numerical analysis and applied mathematics 2005. Official conference of the European Society of Computational Methods in Sciences and Engineering (ESCMSE), Rhodes, Greek, September 16--20, 2005. Weinheim: Wiley-VCH. 796--799 (2005; Zbl 1084.68090)
Landau, Gad M.; Parida, Laxmi; Weimann, Oren
Using PQ trees for comparative genomics. (English) Zbl 1130.92301
Apostolico, Alberto (ed.) et al., Combinatorial pattern matching. 16th annual symposium, CPM 2005, Jeju Island, Korea, June 19–22, 2005. Proceedings. Berlin: Springer (ISBN 3-540-26201-6/pbk). Lecture Notes in Computer Science 3537, 128-143 (2005).
MSC:  92D10 68R15 68T05
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\textit{G. M. Landau} et al., Lect. Notes Comput. Sci. 3537, 128--143 (2005; Zbl 1130.92301)
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Lin, Yaw-Ling; Hsu, Tsan-Sheng
Efficient algorithms for descendent subtrees comparison of phylogenetic trees with applications to co-evolutionary classifications in bacterial genome. (English) Zbl 1205.92055
Ibaraki, Toshihide (ed.) et al., Algorithms and computation. 14th international symposium, ISAAC 2003, Kyoto, Japan, December 15–17, 2003. Proceedings. Berlin: Springer (ISBN 3-540-20695-7/pbk). Lect. Notes Comput. Sci. 2906, 339-351 (2003).
MSC:  92D15 68W05 05C90
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\textit{Y.-L. Lin} and \textit{T.-S. Hsu}, Lect. Notes Comput. Sci. 2906, 339--351 (2003; Zbl 1205.92055)
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Bryant, David
A classification of consensus methods for phylogenetics. (English) Zbl 1029.05032
Janowitz, M. F. (ed.) et al., Bioconsensus. DIMACS working group meetings on bioconsensus, October 25-26, 2000 and October 2-5, 2001, DIMACS Center. Providence, RI: American Mathematical Society (AMS). DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 61, 163-183 (2003).
Reviewer: Péter L.Erdős (Budapest)
MSC:  05C05 92B10 91B12 92D15
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\textit{D. Bryant}, DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 61, 163--183 (2003; Zbl 1029.05032)
Bryant, David; Tsang, John; Kearney, Paul; Li, Ming
Computing the quartet distance between evolutionary trees. (English) Zbl 0956.68105
Proceedings of the 11th annual ACM-SIAM symposium on Discrete algorithms. San Francisco, CA, USA, January 9-11, 2000. Philadelphia, PA: SIAM. 285-286 (2000).
MSC:  68R10
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\textit{D. Bryant} et al., in: Proceedings of the 11th annual ACM-SIAM symposium on discrete algorithms, SODA 2000, San Francisco, CA, USA, January 9--11, 2000. Philadelphia, PA: SIAM. 285--286 (2000; Zbl 0956.68105)
Kao, Ming-Yang; Lam, Tak-Wah; Przytycka, Teresa M.; Sung, Wing-Kin; Ting, Hing-Fung
General techniques for comparing unrooted evolutionary trees. (English) Zbl 0962.68173
STOC ’97. Proceedings of the 29th annual ACM symposium on theory of computing, El Paso, TX, USA, May 4-6, 1997. New York, NY: ACM, Association for Computing Machinery, 54-65 (1999).
MSC:  68W05 68R10
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\textit{M.-Y. Kao} et al., in: Proceedings of the 29th annual ACM symposium on theory of computing, STOC '97. El Paso, TX, USA, May 4--6, 1997. New York, NY: ACM, Association for Computing Machinery. 54--65 (1999; Zbl 0962.68173)
Kao, Ming-Yang; Lam, Tak-Wah; Sung, Wing-Kin; Ting, Hing-Fung
A decomposition theorem for maximum weight bipartite matchings with applications to evolutionary trees. (English) Zbl 0944.05082
Nešetřil, Jaroslav (ed.), Algorithms - ESA ’99. 7th annual European symposium, Prague, Czech Republic, July 16-18, 1999. Proceedings. Berlin: Springer. Lect. Notes Comput. Sci. 1643, 438-449 (1999).
Reviewer: D.Cieslik (Greifswald)
MSC:  05C70 05C85 05C05 68Q25 92D15
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\textit{M.-Y. Kao} et al., Lect. Notes Comput. Sci. 1643, 438--449 (1999; Zbl 0944.05082)
Kearney, Paul; Li, Ming; Tsang, John; Jiang, Tao
Recovering branches on the tree of life: An approximation algorithm. (English) Zbl 0923.92014
Proceedings of the 10th annual ACM-SIAM symposium on discrete algorithms. Baltimore, MD, USA, January 17–19, 1999. Philadelphia, PA: SIAM. 37-546 (1999).
MSC:  92D15 92-08 65Y20
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\textit{P. Kearney} et al., in: Proceedings of the 10th annual ACM-SIAM symposium on discrete algorithms, SODA '99. Baltimore, MD, USA, January 17--19, 1999. Philadelphia, PA: SIAM. 37--546 (1999; Zbl 0923.92014)
Kao, Ming-Yang; Lingas, Andrzej; Östlin, Anna
Balanced randomized tree splitting with applications to evolutionary tree constructions. (English) Zbl 0930.05090
Meinel, Christoph (ed.) et al., STACS 99. 16th annual symposium on Theoretical aspects of computer science, Trier, Germany, March 4–6, 1999. Proceedings. Berlin: Springer. Lect. Notes Comput. Sci. 1563, 184-196 (1999).
Reviewer: Vincent Moulton (Sundsvall)
MSC:  05C85 05C05
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\textit{M.-Y. Kao} et al., Lect. Notes Comput. Sci. 1563, 184--196 (1999; Zbl 0930.05090)
Apostolico, Alberto; Giancarlo, Raffaele
Sequence alignment in molecular biology. (English) Zbl 0931.92011
Farach-Colton, Martin (ed.) et al., Mathematical support for molecular biology. Papers related to the special year 1994-1998. Providence, RI: AMS, American Mathematical Society. DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 47, 85-115 (1999).
MSC:  92C40
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\textit{A. Apostolico} and \textit{R. Giancarlo}, DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 47, 85--115 (1999; Zbl 0931.92011)
Goldman, Nick; Thorne, Jeffrey L.; Jones, David T.
Hidden Markov models for inferring evolutionary trees and predicting protein secondary structures. (English) Zbl 0923.62113
Proceedings of the 51st session of the International Statistical Institute, Istanbul, Turkey, August 18–26, 1997. Vol. 2. Voorburg: International Statistical Institute, 233-236 (1997).
MSC:  62P10 92D15 92C40
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\textit{N. Goldman} et al., in: Proceedings of the 51st session of the International Statistical Institute, Istanbul, Turkey, August 18--26, 1997. Vol. 2. Voorburg: International Statistical Institute. 233--236 (1997; Zbl 0923.62113)
Berry, Vincent; Gascuel, Olivier
Inferring evolutionary trees with strong combinatorial evidence. (English) Zbl 0899.92026
Jiang, Tao (ed.) et al., Computing and combinatorics. 3rd annual international conference, COCOON ’97. Shanghai, China. August 20–22, 1997. Proceedings. Berlin: Springer. Lect. Notes Comput. Sci. 1276, 111-123 (1997).
MSC:  92D15 05C90 05C05 68R05 68R10
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\textit{V. Berry} and \textit{O. Gascuel}, Lect. Notes Comput. Sci. 1276, 111--123 (1997; Zbl 0899.92026)
Kannan, Sampath; Warnow, Tandy; Yooseph, Shibu
Computing the local consensus of trees. (English) Zbl 0847.92013
Clarkson, K. (ed.), Proceedings of the 6th annual ACM-SIAM symposium on discrete algorithms, San Francisco, CA, USA, January 22-24, 1995. Philadelphia, PA: SIAM. 68-77 (1995).
MSC:  92D15 92B05
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\textit{S. Kannan} et al., in: Proceedings of the 6th annual ACM-SIAM symposium on discrete algorithms, SODA '95, San Francisco, CA, USA, January 22--24, 1995. Philadelphia, PA: SIAM; New York, NY: ACM. 68--77 (1995; Zbl 0847.92013)
Farach, Martin; Thorup, Mikkel
Fast comparison of evolutionary trees. (English) Zbl 0869.92013
Proceedings of the 5th annual ACM-SIAM symposium on discrete algorithms, Arlington, VA, USA, January 23-25, 1994. New York, NY: ACM, 481-488 (1994).
MSC:  92D15 92-08 05C05 65Y20
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\textit{M. Farach} and \textit{M. Thorup}, in: Proceedings of the 5th annual ACM-SIAM symposium on discrete algorithms, SODA '94, Arlington, VA, USA, January 23--25, 1994. New York, NY: ACM; Philadelphia, PA: SIAM. 481--488 (1994; Zbl 0869.92013)
Warnow, Tandy J.
Tree compatibility and inferring evolutionary history. (English) Zbl 0799.92012
Ramachandran, Vijaya (ed.), Discrete algorithms. Proceedings of the 4th annual ACM-SIAM symposium, held at Austin, TX, USA, January 25-27, 1993. Philadelphia, PA: SIAM. 382-391 (1993).
MSC:  92D15 05C90 68Q25 68R10 05C05 05C78
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\textit{T. J. Warnow}, in: Discrete algorithms. Proceedings of the 4th annual ACM-SIAM symposium, held at Austin, TX, USA, January 25-27, 1993. Philadelphia, PA: SIAM. 382--391 (1993; Zbl 0799.92012)

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