Dumm, Will; Barker, Mary; Howard-Snyder, William; Dewitt, William S. III; Matsen, Frederick A. IV Representing and extending ensembles of parsimonious evolutionary histories with a directed acyclic graph. (English) Zbl 07770158 J. Math. Biol. 87, No. 5, Paper No. 75, 47 p. (2023). MSC: 92D15 05C90 PDFBibTeX XMLCite \textit{W. Dumm} et al., J. Math. Biol. 87, No. 5, Paper No. 75, 47 p. (2023; Zbl 07770158) Full Text: DOI arXiv OA License
Shi, Chengchun; Li, Lexin Testing mediation effects using logic of Boolean matrices. (English) Zbl 1515.62120 J. Am. Stat. Assoc. 117, No. 540, 2014-2027 (2022). MSC: 62P10 62H22 62M40 92C55 PDFBibTeX XMLCite \textit{C. Shi} and \textit{L. Li}, J. Am. Stat. Assoc. 117, No. 540, 2014--2027 (2022; Zbl 1515.62120) Full Text: DOI arXiv
Gogoshin, Grigoriy; Branciamore, Sergio; Rodin, Andrei S. Synthetic data generation with probabilistic Bayesian networks. (English) Zbl 1501.92035 Math. Biosci. Eng. 18, No. 6, 8603-8621 (2021). MSC: 92C42 92-08 05C90 PDFBibTeX XMLCite \textit{G. Gogoshin} et al., Math. Biosci. Eng. 18, No. 6, 8603--8621 (2021; Zbl 1501.92035) Full Text: DOI
Korchmaros, Annachiara The structure of 2-colored best match graphs. (English) Zbl 1473.05111 Discrete Appl. Math. 304, 397-416 (2021). MSC: 05C20 05C10 92D10 92D15 05C90 PDFBibTeX XMLCite \textit{A. Korchmaros}, Discrete Appl. Math. 304, 397--416 (2021; Zbl 1473.05111) Full Text: DOI arXiv
Erdös, Péter L.; Francis, Andrew; Mezei, Tamás Róbert Rooted NNI moves and distance-1 tail moves on tree-based phylogenetic networks. (English) Zbl 1460.92140 Discrete Appl. Math. 294, 205-213 (2021). Reviewer: Fatima T. Adylova (Tashkent) MSC: 92D15 92C42 05C90 PDFBibTeX XMLCite \textit{P. L. Erdös} et al., Discrete Appl. Math. 294, 205--213 (2021; Zbl 1460.92140) Full Text: DOI arXiv
Döcker, Janosch; Linz, Simone; Semple, Charles Display sets of normal and tree-child networks. (English) Zbl 1456.05154 Electron. J. Comb. 28, No. 1, Research Paper P1.8, 21 p. (2021). MSC: 05C82 05C20 05C85 92D15 92C42 PDFBibTeX XMLCite \textit{J. Döcker} et al., Electron. J. Comb. 28, No. 1, Research Paper P1.8, 21 p. (2021; Zbl 1456.05154) Full Text: DOI arXiv
Hujdurović, Ademir; Husić, Edin; Milanić, Martin; Rizzi, Romeo; Tomescu, Alexandru I. Perfect phylogenies via branchings in acyclic digraphs and a generalization of Dilworth’s theorem. (English) Zbl 1454.92023 ACM Trans. Algorithms 14, No. 2, Article No. 20, 26 p. (2018). MSC: 92D15 05C20 05C90 68W25 92D10 PDFBibTeX XMLCite \textit{A. Hujdurović} et al., ACM Trans. Algorithms 14, No. 2, Article No. 20, 26 p. (2018; Zbl 1454.92023) Full Text: DOI arXiv Link
Han, Sung Won; Kim, Sunghwan; Seok, Junhee; Yoon, Jeewhan; Zhong, Hua Estimation of directed subnetworks in ultra-high dimensional data for gene network problems. (English) Zbl 1387.92034 Stat. Interface 10, No. 4, 657-676 (2017). MSC: 92C40 62P10 PDFBibTeX XMLCite \textit{S. W. Han} et al., Stat. Interface 10, No. 4, 657--676 (2017; Zbl 1387.92034) Full Text: DOI
Fertin, Guillaume; Komusiewicz, Christian; Mohamed-Babou, Hafedh; Rusu, Irena Finding supported paths in heterogeneous networks. (English) Zbl 1461.68151 Algorithms (Basel) 8, No. 4, 810-831 (2015). MSC: 68R10 05C38 05C85 68Q17 68Q25 92C42 PDFBibTeX XMLCite \textit{G. Fertin} et al., Algorithms (Basel) 8, No. 4, 810--831 (2015; Zbl 1461.68151) Full Text: DOI
Colombo, Diego; Maathuis, Marloes H. Order-independent constraint-based causal structure learning. (English) Zbl 1312.68165 J. Mach. Learn. Res. 15, 3921-3962 (2014). MSC: 68T05 62-04 62H99 68R10 92D10 PDFBibTeX XMLCite \textit{D. Colombo} and \textit{M. H. Maathuis}, J. Mach. Learn. Res. 15, 3921--3962 (2014; Zbl 1312.68165) Full Text: arXiv Link
Kelk, Steven; Scornavacca, Celine Constructing minimal phylogenetic networks from softwired clusters is fixed parameter tractable. (English) Zbl 1350.92036 Algorithmica 68, No. 4, 886-915 (2014). MSC: 92D15 05C05 68W05 68R10 PDFBibTeX XMLCite \textit{S. Kelk} and \textit{C. Scornavacca}, Algorithmica 68, No. 4, 886--915 (2014; Zbl 1350.92036) Full Text: DOI arXiv
Crona, Kristina; Greene, Devin; Barlow, Miriam The peaks and geometry of fitness landscapes. (English) Zbl 1368.92122 J. Theor. Biol. 317, 1-10 (2013). MSC: 92D15 92D10 05C90 PDFBibTeX XMLCite \textit{K. Crona} et al., J. Theor. Biol. 317, 1--10 (2013; Zbl 1368.92122) Full Text: DOI Link
Pan, Shin-Liang; Chen, Hsiu-Hsi Time-varying Markov regression random-effect model with Bayesian estimation procedures: Application to dynamics of functional recovery in patients with stroke. (English) Zbl 1194.92043 Math. Biosci. 227, No. 1, 72-79 (2010). MSC: 92C50 60J20 62F15 05C90 62P10 65C40 PDFBibTeX XMLCite \textit{S.-L. Pan} and \textit{H.-H. Chen}, Math. Biosci. 227, No. 1, 72--79 (2010; Zbl 1194.92043) Full Text: DOI
Tsiaras, Vassilis; Triantafilou, Sofia; Tollis, Ioannis G. DAGmaps: space filling visualization of directed acyclic graphs. (English) Zbl 1202.05143 J. Graph Algorithms Appl. 13, No. 3, 319-347 (2009). MSC: 05C90 05C20 92D10 PDFBibTeX XMLCite \textit{V. Tsiaras} et al., J. Graph Algorithms Appl. 13, No. 3, 319--347 (2009; Zbl 1202.05143) Full Text: DOI
Tsiaras, Vassilis; Triantafilou, Sofia; Tollis, Ioannis G. Treemaps for directed acyclic graphs. (English) Zbl 1137.68504 Hong, Seok-Hee (ed.) et al., Graph drawing. 15th international symposium, GD 2007, Sydney, Australia, September 24–26, 2007. Revised papers. Berlin: Springer (ISBN 978-3-540-77536-2/pbk). Lecture Notes in Computer Science 4875, 377-388 (2008). MSC: 68R10 05C62 05C85 92D10 PDFBibTeX XMLCite \textit{V. Tsiaras} et al., Lect. Notes Comput. Sci. 4875, 377--388 (2008; Zbl 1137.68504) Full Text: DOI
Cardona, Gabriel; Rosselló, Francesc; Valiente, Gabriel Tripartitions do not always discriminate phylogenetic networks. (English) Zbl 1130.92040 Math. Biosci. 211, No. 2, 356-370 (2008). MSC: 92D15 05C90 PDFBibTeX XMLCite \textit{G. Cardona} et al., Math. Biosci. 211, No. 2, 356--370 (2008; Zbl 1130.92040) Full Text: DOI arXiv
Nagarajan, Radhakrishnan; Aubin, Jane E.; Peterson, Charlotte A. Robust dependencies and structures in stem cell differentiation. (English) Zbl 1073.92028 Int. J. Bifurcation Chaos Appl. Sci. Eng. 15, No. 4, 1503-1514 (2005). MSC: 92D10 92C37 05C90 62P10 PDFBibTeX XMLCite \textit{R. Nagarajan} et al., Int. J. Bifurcation Chaos Appl. Sci. Eng. 15, No. 4, 1503--1514 (2005; Zbl 1073.92028) Full Text: DOI
Baroni, Mihaela; Semple, Charles; Steel, Mike A framework for representing reticulate evolution. (English) Zbl 1059.05034 Ann. Comb. 8, No. 4, 391-408 (2004). Reviewer: Péter L. Erdős (Budapest) MSC: 05C05 92D15 PDFBibTeX XMLCite \textit{M. Baroni} et al., Ann. Comb. 8, No. 4, 391--408 (2004; Zbl 1059.05034) Full Text: DOI Link
Chao, Kun-Mao On computing all suboptimal alignments. (English) Zbl 0944.92007 Inf. Sci. 105, No. 1-4, 189-207 (1998). MSC: 92C40 92-08 68W10 90C39 90C90 PDFBibTeX XMLCite \textit{K.-M. Chao}, Inf. Sci. 105, No. 1--4, 189--207 (1998; Zbl 0944.92007) Full Text: DOI
Roberts, Fred S.; Sheng, Li Phylogeny numbers. (English) Zbl 0907.05024 Discrete Appl. Math. 87, No. 1-3, 213-228 (1998). Reviewer: W.G.Brown (Montreal) MSC: 05C20 05C35 92D40 05C85 91F20 PDFBibTeX XMLCite \textit{F. S. Roberts} and \textit{L. Sheng}, Discrete Appl. Math. 87, No. 1--3, 213--228 (1998; Zbl 0907.05024) Full Text: DOI Link
Łuczak, Tomasz; Cohen, Joel E. Stratigraphy of a random acyclic directed graph: The size of trophic levels in the cascade model. (English) Zbl 0790.05076 Ann. Appl. Probab. 3, No. 2, 403-420 (1993). Reviewer: W.Schlee (München) MSC: 05C80 05C20 92D40 PDFBibTeX XMLCite \textit{T. Łuczak} and \textit{J. E. Cohen}, Ann. Appl. Probab. 3, No. 2, 403--420 (1993; Zbl 0790.05076) Full Text: DOI