Bhattacharya, Priyan; Raman, Karthik; Tangirala, Arun K. On biological networks capable of robust adaptation in the presence of uncertainties: a linear systems-theoretic approach. (English) Zbl 1519.92078 Math. Biosci. 358, Article ID 108984, 16 p. (2023). MSC: 92C42 93B35 93C05 PDFBibTeX XMLCite \textit{P. Bhattacharya} et al., Math. Biosci. 358, Article ID 108984, 16 p. (2023; Zbl 1519.92078) Full Text: DOI
Dankelmann, Peter On the Wiener index of orientations of graphs. (English) Zbl 1520.05025 Discrete Appl. Math. 336, 125-131 (2023). Reviewer: Rosário Fernandes (Lisboa) MSC: 05C09 05C12 05C20 05C92 92E10 PDFBibTeX XMLCite \textit{P. Dankelmann}, Discrete Appl. Math. 336, 125--131 (2023; Zbl 1520.05025) Full Text: DOI arXiv
Hernandez, Bryan S.; Mendoza, Eduardo R. Positive equilibria of power law kinetics on networks with independent linkage classes. (English) Zbl 1519.92365 J. Math. Chem. 61, No. 3, 630-651 (2023). Reviewer: Dieter Erle (Dortmund) MSC: 92E20 92C42 05C92 92C40 92C45 PDFBibTeX XMLCite \textit{B. S. Hernandez} and \textit{E. R. Mendoza}, J. Math. Chem. 61, No. 3, 630--651 (2023; Zbl 1519.92365) Full Text: DOI arXiv
Shi, Yushi; Li, Ting; Zhu, Jiandong Complete phase synchronization of nonidentical high-dimensional Kuramoto model. (English) Zbl 1509.34053 J. Stat. Phys. 190, No. 1, Paper No. 6, 15 p. (2023). Reviewer: Carlo Laing (Auckland) MSC: 34D06 34C15 05C20 92B20 PDFBibTeX XMLCite \textit{Y. Shi} et al., J. Stat. Phys. 190, No. 1, Paper No. 6, 15 p. (2023; Zbl 1509.34053) Full Text: DOI
Deng, Hanyuan; Tang, Zikai; Yang, Jiaxiang; Yang, Jing; You, Meiling On the vertex-degree based invariants of digraphs. (English) Zbl 1513.05078 DML, Discrete Math. Lett. 9, 2-9 (2022). MSC: 05C09 05C20 05C35 05C07 05C92 92E10 PDFBibTeX XMLCite \textit{H. Deng} et al., DML, Discrete Math. Lett. 9, 2--9 (2022; Zbl 1513.05078) Full Text: DOI arXiv
Zhu, Tingting Emergence of synchronization in Kuramoto model with frustration under general network topology. (English) Zbl 1485.34141 Netw. Heterog. Media 17, No. 2, 255-291 (2022). MSC: 34D06 34C15 92B25 70F99 PDFBibTeX XMLCite \textit{T. Zhu}, Netw. Heterog. Media 17, No. 2, 255--291 (2022; Zbl 1485.34141) Full Text: DOI arXiv
Chen, Shanshan; Shi, Junping; Shuai, Zhisheng; Wu, Yixiang Global dynamics of a Lotka-Volterra competition patch model. (English) Zbl 1480.92167 Nonlinearity 35, No. 2, 817-842 (2022). MSC: 92D25 92D40 34C12 34D23 37C65 PDFBibTeX XMLCite \textit{S. Chen} et al., Nonlinearity 35, No. 2, 817--842 (2022; Zbl 1480.92167) Full Text: DOI arXiv
Babai, Azam; Golpar-Raboky, Effat Resolvent energy of digraphs. (English) Zbl 1507.92134 Iran. J. Math. Chem. 12, No. 3, 139-159 (2021). MSC: 92E10 05C92 05C20 PDFBibTeX XMLCite \textit{A. Babai} and \textit{E. Golpar-Raboky}, Iran. J. Math. Chem. 12, No. 3, 139--159 (2021; Zbl 1507.92134) Full Text: DOI
Khan, Mehtab A new notion of energy of digraphs. (English) Zbl 1511.92103 Iran. J. Math. Chem. 12, No. 2, 111-125 (2021). Reviewer: Dieter Erle (Dortmund) MSC: 92E10 05C92 05C20 05C31 05C38 PDFBibTeX XMLCite \textit{M. Khan}, Iran. J. Math. Chem. 12, No. 2, 111--125 (2021; Zbl 1511.92103) Full Text: DOI
Shanthakumari, Y.; Lokesha, V. Skew-harmonic and skew-sum connectivity energy of some digraphs. (English) Zbl 1482.05210 Paikray, Susanta Kumar (ed.) et al., New trends in applied analysis and computational mathematics. Proceedings of the international conference on advances in mathematics and computing, ICAMC 2020, Odisha, India, February 7–8, 2020. Singapore: Springer. Adv. Intell. Syst. Comput. 1356, 287-300 (2021). MSC: 05C50 05C20 05C92 92E10 05C09 PDFBibTeX XMLCite \textit{Y. Shanthakumari} and \textit{V. Lokesha}, Adv. Intell. Syst. Comput. 1356, 287--300 (2021; Zbl 1482.05210) Full Text: DOI
Govc, Dejan; Levi, Ran; Smith, Jason P. Complexes of tournaments, directionality filtrations and persistent homology. (English) Zbl 1494.55022 J. Appl. Comput. Topol. 5, No. 2, 313-337 (2021). Reviewer: Henri Riihimäki (Stockholm) MSC: 55U10 55N31 05E45 05C20 92C20 PDFBibTeX XMLCite \textit{D. Govc} et al., J. Appl. Comput. Topol. 5, No. 2, 313--337 (2021; Zbl 1494.55022) Full Text: DOI arXiv
Schaller, David; Geiß, Manuela; Chávez, Edgar; González Laffitte, Marcos; López Sánchez, Alitzel; Stadler, Bärbel M. R.; Valdivia, Dulce I.; Hellmuth, Marc; Hernández Rosales, Maribel; Stadler, Peter F. Corrigendum to: “Best match graphs”. (English) Zbl 07340472 J. Math. Biol. 82, No. 6, Paper No. 47, 9 p. (2021). MSC: 00Bxx 05C05 68R10 92-10 92B10 PDFBibTeX XMLCite \textit{D. Schaller} et al., J. Math. Biol. 82, No. 6, Paper No. 47, 9 p. (2021; Zbl 07340472) Full Text: DOI
Geiß, Manuela; Laffitte, Marcos E. González; Sánchez, Alitzel López; Valdivia, Dulce I.; Hellmuth, Marc; Rosales, Maribel Hernández; Stadler, Peter F. Best match graphs and reconciliation of gene trees with species trees. (English) Zbl 1434.05035 J. Math. Biol. 80, No. 5, 1459-1495 (2020). MSC: 05C05 05C62 05C90 92B10 PDFBibTeX XMLCite \textit{M. Geiß} et al., J. Math. Biol. 80, No. 5, 1459--1495 (2020; Zbl 1434.05035) Full Text: DOI arXiv
Dong, Jiu-Gang; Ha, Seung-Yeal; Kim, Doheon Emergent behaviors of continuous and discrete thermomechanical Cucker-Smale models on general digraphs. (English) Zbl 1464.34068 Math. Models Methods Appl. Sci. 29, No. 4, 589-632 (2019). MSC: 34C60 34D05 34A12 34D06 39A12 05C20 92D50 PDFBibTeX XMLCite \textit{J.-G. Dong} et al., Math. Models Methods Appl. Sci. 29, No. 4, 589--632 (2019; Zbl 1464.34068) Full Text: DOI arXiv
Geiß, Manuela; Chávez, Edgar; González Laffitte, Marcos; López Sánchez, Alitzel; Stadler, Bärbel M. R.; Valdivia, Dulce I.; Hellmuth, Marc; Hernández Rosales, Maribel; Stadler, Peter F. Best match graphs. (English) Zbl 1415.92133 J. Math. Biol. 78, No. 7, 2015-2057 (2019); corrigendum ibid. 82, No. 6, Paper No. 47, 9 p. (2021). MSC: 92D15 92D10 05C90 PDFBibTeX XMLCite \textit{M. Geiß} et al., J. Math. Biol. 78, No. 7, 2015--2057 (2019; Zbl 1415.92133) Full Text: DOI arXiv
Nawar, Ashraf S.; El Atik, Abd El Fattah A. A model of a human heart via graph nano topological spaces. (English) Zbl 1405.05180 Int. J. Biomath. 12, No. 1, Article ID 1950006, 18 p. (2019). MSC: 05C90 92C30 05C20 54C60 54E55 PDFBibTeX XMLCite \textit{A. S. Nawar} and \textit{A. E. F. A. El Atik}, Int. J. Biomath. 12, No. 1, Article ID 1950006, 18 p. (2019; Zbl 1405.05180) Full Text: DOI
Hujdurović, Ademir; Husić, Edin; Milanić, Martin; Rizzi, Romeo; Tomescu, Alexandru I. Perfect phylogenies via branchings in acyclic digraphs and a generalization of Dilworth’s theorem. (English) Zbl 1454.92023 ACM Trans. Algorithms 14, No. 2, Article No. 20, 26 p. (2018). MSC: 92D15 05C20 05C90 68W25 92D10 PDFBibTeX XMLCite \textit{A. Hujdurović} et al., ACM Trans. Algorithms 14, No. 2, Article No. 20, 26 p. (2018; Zbl 1454.92023) Full Text: DOI arXiv Link
Just, Winfried Approximating network dynamics: some open problems. (English) Zbl 1394.05120 Discrete Contin. Dyn. Syst., Ser. B 23, No. 5, 1917-1930 (2018). MSC: 05C82 05C80 05C20 37C50 37N25 92B20 92C42 PDFBibTeX XMLCite \textit{W. Just}, Discrete Contin. Dyn. Syst., Ser. B 23, No. 5, 1917--1930 (2018; Zbl 1394.05120) Full Text: DOI
Kasprzak, Marta Classification of de Bruijn-based labeled digraphs. (English) Zbl 1376.05134 Discrete Appl. Math. 234, 86-92 (2018). MSC: 05C78 05C20 05C76 05C45 05C90 92D20 PDFBibTeX XMLCite \textit{M. Kasprzak}, Discrete Appl. Math. 234, 86--92 (2018; Zbl 1376.05134) Full Text: DOI
Bayegan, Amir H.; Clote, Peter An IP algorithm for RNA folding trajectories. (English) Zbl 1443.92135 Schwartz, Russell (ed.) et al., 17th international workshop on algorithms in bioinformatics, WABI 2017, Boston, MA, USA, August 21–23, 2017. Proceedings. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 88, Article 6, 16 p. (2017). MSC: 92D20 90C10 92-04 PDFBibTeX XMLCite \textit{A. H. Bayegan} and \textit{P. Clote}, LIPIcs -- Leibniz Int. Proc. Inform. 88, Article 6, 16 p. (2017; Zbl 1443.92135) Full Text: DOI
Paniello, I. Backwards genetic inheritance through coalgebra-graphs. (English) Zbl 1418.17073 Linear Multilinear Algebra 65, No. 5, 943-961 (2017). MSC: 17D92 05C20 05C25 17A60 92D10 PDFBibTeX XMLCite \textit{I. Paniello}, Linear Multilinear Algebra 65, No. 5, 943--961 (2017; Zbl 1418.17073) Full Text: DOI
Huber, Katharina T.; Moulton, Vincent; Steel, Mike; Wu, Taoyang Folding and unfolding phylogenetic trees and networks. (English) Zbl 1348.05200 J. Math. Biol. 73, No. 6-7, 1761-1780 (2016). MSC: 05C82 05C20 05C70 05C90 92D15 PDFBibTeX XMLCite \textit{K. T. Huber} et al., J. Math. Biol. 73, No. 6--7, 1761--1780 (2016; Zbl 1348.05200) Full Text: DOI arXiv
Richard, Anthony; Desrosiers, Patrick; Hardy, Simon; Doyon, Nicolas Counting hidden neural networks. (English) Zbl 1336.05009 J. Integer Seq. 19, No. 4, Article 16.4.7, 28 p. (2016). MSC: 05A15 05A16 20D60 92B20 68T05 PDFBibTeX XMLCite \textit{A. Richard} et al., J. Integer Seq. 19, No. 4, Article 16.4.7, 28 p. (2016; Zbl 1336.05009) Full Text: EMIS
Penrose, Mathew D. The strong giant in a random digraph. (English) Zbl 1335.05164 J. Appl. Probab. 53, No. 1, 57-70 (2016). MSC: 05C80 60J85 92D30 PDFBibTeX XMLCite \textit{M. D. Penrose}, J. Appl. Probab. 53, No. 1, 57--70 (2016; Zbl 1335.05164) Full Text: DOI arXiv Euclid
Blath, Jochen; Kadow, Stephan; Ortgiese, Marcel The largest strongly connected component in the cyclical pedigree model of Wakeley et al. (English) Zbl 1304.92105 Theor. Popul. Biol. 98, 28-37 (2014). MSC: 92D15 92D10 05C90 PDFBibTeX XMLCite \textit{J. Blath} et al., Theor. Popul. Biol. 98, 28--37 (2014; Zbl 1304.92105) Full Text: DOI arXiv
Angeli, David; Banaji, Murad; Pantea, Casian Combinatorial approaches to Hopf bifurcations in systems of interacting elements. (English) Zbl 1315.15007 Commun. Math. Sci. 12, No. 6, 1101-1133 (2014). Reviewer: João R. Cardoso (Coimbra) MSC: 15A18 15A75 34C23 05C90 37C27 05C50 05C20 37G15 92E20 80A32 PDFBibTeX XMLCite \textit{D. Angeli} et al., Commun. Math. Sci. 12, No. 6, 1101--1133 (2014; Zbl 1315.15007) Full Text: DOI arXiv
Aracena, J.; Demongeot, J.; Fanchon, E.; Montalva, M. On the number of different dynamics in Boolean networks with deterministic update schedules. (English) Zbl 1402.92195 Math. Biosci. 242, No. 2, 188-194 (2013). MSC: 92C42 94C10 05C90 92-04 PDFBibTeX XMLCite \textit{J. Aracena} et al., Math. Biosci. 242, No. 2, 188--194 (2013; Zbl 1402.92195) Full Text: DOI Link
Bocci, Cristiano; Korchmaros, Annachiara Tropical properties of alignment matrices. (English) Zbl 1279.15023 Adv. Appl. Discrete Math. 11, No. 1, 23-46 (2013). Reviewer: Bojan Kuzma (Ljubljana) MSC: 15A80 92D20 92D15 16Y60 05C20 06B25 05A05 PDFBibTeX XMLCite \textit{C. Bocci} and \textit{A. Korchmaros}, Adv. Appl. Discrete Math. 11, No. 1, 23--46 (2013; Zbl 1279.15023) Full Text: Link
Willson, Stephen J. Restricted trees: simplifying networks with bottlenecks. (English) Zbl 1334.92301 Bull. Math. Biol. 73, No. 10, 2322-2338 (2011). MSC: 92D15 05C90 PDFBibTeX XMLCite \textit{S. J. Willson}, Bull. Math. Biol. 73, No. 10, 2322--2338 (2011; Zbl 1334.92301) Full Text: DOI arXiv
Bo, Zheng; Chen, Rongsi The structure feature of essentially disconnected benzenoid systems. (English) Zbl 1265.05275 MATCH Commun. Math. Comput. Chem. 64, No. 2, 497-511 (2010). MSC: 05C20 05C90 92E10 PDFBibTeX XMLCite \textit{Z. Bo} and \textit{R. Chen}, MATCH Commun. Math. Comput. Chem. 64, No. 2, 497--511 (2010; Zbl 1265.05275)
Aracena, Julio Maximum number of fixed points in regulatory Boolean networks. (English) Zbl 1144.92323 Bull. Math. Biol. 70, No. 5, 1398-1409 (2008). MSC: 92D10 05C90 94C99 94C10 PDFBibTeX XMLCite \textit{J. Aracena}, Bull. Math. Biol. 70, No. 5, 1398--1409 (2008; Zbl 1144.92323) Full Text: DOI Link
Albert, Réka; DasGupta, Bhaskar; Dondi, Riccardo; Sontag, Eduardo Inferring (biological) signal transduction networks via transitive reductions of directed graphs. (English) Zbl 1147.68057 Algorithmica 51, No. 2, 129-159 (2008). MSC: 68R10 05C20 05C85 68W25 92B99 PDFBibTeX XMLCite \textit{R. Albert} et al., Algorithmica 51, No. 2, 129--159 (2008; Zbl 1147.68057) Full Text: DOI
Chang, Hsun-Wen; Tsai, Pei-Fang Characterizing the reconstruction and enumerating the patterns of DNA sequences with repeats. (English) Zbl 1128.92011 J. Comb. Optim. 14, No. 2-3, 331-347 (2007). MSC: 92C40 05C90 05A99 PDFBibTeX XMLCite \textit{H.-W. Chang} and \textit{P.-F. Tsai}, J. Comb. Optim. 14, No. 2--3, 331--347 (2007; Zbl 1128.92011) Full Text: DOI
Sun, L.; Wang, M. An algorithm for a decomposition of weighted digraphs: with applications to life cycle analysis in ecology. (English) Zbl 1116.92071 J. Math. Biol. 54, No. 2, 199-226 (2007). MSC: 92D40 05C20 05C90 PDFBibTeX XMLCite \textit{L. Sun} and \textit{M. Wang}, J. Math. Biol. 54, No. 2, 199--226 (2007; Zbl 1116.92071) Full Text: DOI
Baroni, Mihaela Carmen Hybrid phylogenies with certain properties of regularity. (English) Zbl 1174.05324 Stud. Cercet. Ştiinţ., Ser. Mat., Univ. Bacău 16, Suppl., 57-66 (2006). MSC: 05C05 92C40 92D15 PDFBibTeX XMLCite \textit{M. C. Baroni}, Stud. Cercet. Științ., Ser. Mat., Univ. Bacău 16, 57--66 (2006; Zbl 1174.05324)
Baroni, Mihaela; Steel, Mike Accumulation phylogenies. (English) Zbl 1091.05017 Ann. Comb. 10, No. 1, 19-30 (2006). MSC: 05C05 05C20 92D15 PDFBibTeX XMLCite \textit{M. Baroni} and \textit{M. Steel}, Ann. Comb. 10, No. 1, 19--30 (2006; Zbl 1091.05017) Full Text: DOI Link
Roberts, Fred S.; Sheng, Li Phylogeny numbers. (English) Zbl 0907.05024 Discrete Appl. Math. 87, No. 1-3, 213-228 (1998). Reviewer: W.G.Brown (Montreal) MSC: 05C20 05C35 92D40 05C85 91F20 PDFBibTeX XMLCite \textit{F. S. Roberts} and \textit{L. Sheng}, Discrete Appl. Math. 87, No. 1--3, 213--228 (1998; Zbl 0907.05024) Full Text: DOI Link
Roberts, Fred S.; Sheng, Li Phylogeny graphs of arbitrary digraphs. (English) Zbl 0887.05048 Mirkin, Boris (ed.) et al., Mathematical hierarchies and biology. DIMACS workshop, November 13-15, 1996. Providence, RI: AMS, American Mathematical Society. DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 37, 233-237 (1997). MSC: 05C90 05C20 92D40 92D15 PDFBibTeX XMLCite \textit{F. S. Roberts} and \textit{L. Sheng}, DIMACS, Ser. Discrete Math. Theor. Comput. Sci. 37, 233--237 (1997; Zbl 0887.05048)
Eisenfeld, J.; Grundy, S. M. Structural identification of large systems by reduction to subsystems: VLDL triglycerides. (English) Zbl 0523.92009 Math. Biosci. 66, 129-149 (1983). MSC: 92Cxx 93B30 93A15 PDFBibTeX XMLCite \textit{J. Eisenfeld} and \textit{S. M. Grundy}, Math. Biosci. 66, 129--149 (1983; Zbl 0523.92009) Full Text: DOI Link
Esser, Friedrich; Harary, Frank The pairing theorem for digraph spectra. (English) Zbl 0474.05034 Bull. Malays. Math. Soc., II. Ser. 4, 17-19 (1981). MSC: 05C20 05C50 92Exx PDFBibTeX XMLCite \textit{F. Esser} and \textit{F. Harary}, Bull. Malays. Math. Soc., II. Ser. 4, 17--19 (1981; Zbl 0474.05034)
Ringeisen, Richard D.; Shingledecker, Clark A. A digraph model of behavior under stress. (English) Zbl 0433.92013 Proc. 10th southeast Conf. Combinatorics, graph theory and computing, Boca Raton 1979, Vol. II, Congr.-Numerantium 24, 823-831 (1979). MSC: 92Cxx 05C20 PDFBibTeX XML