Alberti, Frederic; Herrmann, Carolin; Baake, Ellen Selection, recombination, and the ancestral initiation graph. (English) Zbl 1482.92053 Theor. Popul. Biol. 142, 46-56 (2021). MSC: 92D15 PDFBibTeX XMLCite \textit{F. Alberti} et al., Theor. Popul. Biol. 142, 46--56 (2021; Zbl 1482.92053) Full Text: DOI arXiv
Deng, Yun; Song, Yun S.; Nielsen, Rasmus The distribution of waiting distances in ancestral recombination graphs. (English) Zbl 1478.92132 Theor. Popul. Biol. 141, 34-43 (2021). MSC: 92D15 PDFBibTeX XMLCite \textit{Y. Deng} et al., Theor. Popul. Biol. 141, 34--43 (2021; Zbl 1478.92132) Full Text: DOI Link
Lambert, Amaury; Pina, Verónica Miró; Schertzer, Emmanuel Chromosome painting: how recombination mixes ancestral colors. (English) Zbl 1476.60009 Ann. Appl. Probab. 31, No. 2, 826-864 (2021). MSC: 60B12 05A18 60G55 60J25 60K35 92D10 92D20 PDFBibTeX XMLCite \textit{A. Lambert} et al., Ann. Appl. Probab. 31, No. 2, 826--864 (2021; Zbl 1476.60009) Full Text: DOI arXiv Link
Alberti, Frederic; Baake, Ellen Solving the selection-recombination equation: ancestral lines and dual processes. (English) Zbl 1478.92126 Doc. Math. 26, 743-793 (2021). MSC: 92D10 92D15 60J25 60C05 05C80 PDFBibTeX XMLCite \textit{F. Alberti} and \textit{E. Baake}, Doc. Math. 26, 743--793 (2021; Zbl 1478.92126) Full Text: DOI arXiv
Alberti, F.; Baake, E.; Letter, I.; Martínez, S. Solving the migration-recombination equation from a genealogical point of view. (English) Zbl 1465.92072 J. Math. Biol. 82, No. 5, Paper No. 41, 27 p. (2021). MSC: 92D15 60J20 PDFBibTeX XMLCite \textit{F. Alberti} et al., J. Math. Biol. 82, No. 5, Paper No. 41, 27 p. (2021; Zbl 1465.92072) Full Text: DOI arXiv
Heine, K.; Beskos, A.; Jasra, A.; Balding, D.; De Iorio, M. Bridging trees for posterior inference on ancestral recombination graphs. (English) Zbl 1425.92002 Proc. R. Soc. Lond., A, Math. Phys. Eng. Sci. 474, No. 2220, Article ID 20180568, 20 p. (2018). MSC: 92-04 92D15 92D20 PDFBibTeX XMLCite \textit{K. Heine} et al., Proc. R. Soc. Lond., A, Math. Phys. Eng. Sci. 474, No. 2220, Article ID 20180568, 20 p. (2018; Zbl 1425.92002) Full Text: DOI arXiv Link
Bossert, S.; Pfaffelhuber, P. The fixation probability and time for a doubly beneficial mutant. (English) Zbl 1404.92133 Stochastic Processes Appl. 128, No. 12, 4018-4050 (2018). MSC: 92D15 60J85 92D10 PDFBibTeX XMLCite \textit{S. Bossert} and \textit{P. Pfaffelhuber}, Stochastic Processes Appl. 128, No. 12, 4018--4050 (2018; Zbl 1404.92133) Full Text: DOI arXiv
Wirtz, Johannes; Rauscher, Martina; Wiehe, Thomas Topological linkage disequilibrium calculated from coalescent genealogies. (English) Zbl 1405.92184 Theor. Popul. Biol. 124, 41-50 (2018). MSC: 92D10 92D15 PDFBibTeX XMLCite \textit{J. Wirtz} et al., Theor. Popul. Biol. 124, 41--50 (2018; Zbl 1405.92184) Full Text: DOI DOI
Durand, Guillermo; Lessard, Sabin Fixation probability in a two-locus intersexual selection model. (English) Zbl 1349.92101 Theor. Popul. Biol. 109, 75-87 (2016). MSC: 92D10 92D15 PDFBibTeX XMLCite \textit{G. Durand} and \textit{S. Lessard}, Theor. Popul. Biol. 109, 75--87 (2016; Zbl 1349.92101) Full Text: DOI
Griswold, Cortland K. Additive genetic variation and evolvability of a multivariate trait can be increased by epistatic gene action. (English) Zbl 1343.92314 J. Theor. Biol. 387, 241-257 (2015). MSC: 92D10 92D15 PDFBibTeX XMLCite \textit{C. K. Griswold}, J. Theor. Biol. 387, 241--257 (2015; Zbl 1343.92314) Full Text: DOI
Depperschmidt, Andrej; Pardoux, Étienne; Pfaffelhuber, Peter A mixing tree-valued process arising under neutral evolution with recombination. (English) Zbl 1371.92096 Electron. J. Probab. 20, Paper No. 94, 22 p. (2015). MSC: 92D15 92D10 60G10 60K35 PDFBibTeX XMLCite \textit{A. Depperschmidt} et al., Electron. J. Probab. 20, Paper No. 94, 22 p. (2015; Zbl 1371.92096) Full Text: DOI arXiv
Chen, Xian; Ma, Zhi-Ming; Wang, Ying Markov jump processes in modeling coalescent with recombination. (English) Zbl 1319.60163 Ann. Stat. 42, No. 4, 1361-1393 (2014). MSC: 60J75 60J25 65C60 92D10 92B15 92D25 PDFBibTeX XMLCite \textit{X. Chen} et al., Ann. Stat. 42, No. 4, 1361--1393 (2014; Zbl 1319.60163) Full Text: DOI arXiv Euclid
Mano, Shuhei Duality between the two-locus Wright-Fisher diffusion model and the ancestral process with recombination. (English) Zbl 1302.92075 J. Appl. Probab. 50, No. 1, 256-271 (2013). MSC: 92D10 92D15 65C05 60J70 PDFBibTeX XMLCite \textit{S. Mano}, J. Appl. Probab. 50, No. 1, 256--271 (2013; Zbl 1302.92075) Full Text: DOI arXiv Euclid
Kermany, Amir R.; Lessard, Sabin Effect of epistasis and linkage on fixation probability in three-locus models: an ancestral recombination-selection graph approach. (English) Zbl 1322.92034 Theor. Popul. Biol. 82, No. 2, 131-145 (2012). MSC: 92D10 92D15 05C90 PDFBibTeX XMLCite \textit{A. R. Kermany} and \textit{S. Lessard}, Theor. Popul. Biol. 82, No. 2, 131--145 (2012; Zbl 1322.92034) Full Text: DOI
Willson, Stephen J. Properties of normal phylogenetic networks. (English) Zbl 1185.92085 Bull. Math. Biol. 72, No. 2, 340-358 (2010). MSC: 92D15 92C42 05C90 05C20 PDFBibTeX XMLCite \textit{S. J. Willson}, Bull. Math. Biol. 72, No. 2, 340--358 (2010; Zbl 1185.92085) Full Text: DOI
Hössjer, Ola; Hartman, Linda; Humphreys, Keith Ancestral recombination graphs under non-random ascertainment, with applications to gene mapping. (English) Zbl 1276.92058 Stat. Appl. Genet. Mol. Biol. 8, No. 1, Article No. 35, 44 p. (2009). MSC: 92D10 62P10 PDFBibTeX XMLCite \textit{O. Hössjer} et al., Stat. Appl. Genet. Mol. Biol. 8, No. 1, Article No. 35, 44 p. (2009; Zbl 1276.92058) Full Text: DOI
Wu, Yufeng An analytical upper bound on the minimum number of recombinations in the history of SNP sequences in populations. (English) Zbl 1209.68353 Inf. Process. Lett. 109, No. 9, 427-431 (2009). MSC: 68R05 PDFBibTeX XMLCite \textit{Y. Wu}, Inf. Process. Lett. 109, No. 9, 427--431 (2009; Zbl 1209.68353) Full Text: DOI
Pardoux, Etienne; Salamat, Majid On the height and length of the ancestral recombination graph. (English) Zbl 1176.60067 J. Appl. Probab. 46, No. 3, 669-689 (2009). MSC: 60J27 60G51 92D10 PDFBibTeX XMLCite \textit{E. Pardoux} and \textit{M. Salamat}, J. Appl. Probab. 46, No. 3, 669--689 (2009; Zbl 1176.60067) Full Text: DOI
Larribe, Fabrice; Lessard, Sabin A composite-conditional-likelihood approach for gene mapping based on linkage disequilibrium in windows of marker loci. (English) Zbl 1276.92089 Stat. Appl. Genet. Mol. Biol. 7, No. 1, Article No. 27, 31 p. (2008). MSC: 92D20 62P10 62A09 PDFBibTeX XMLCite \textit{F. Larribe} and \textit{S. Lessard}, Stat. Appl. Genet. Mol. Biol. 7, No. 1, Article No. 27, 31 p. (2008; Zbl 1276.92089) Full Text: DOI
Wu, Yufeng; Gusfield, Dan A new recombination lower bound and the minimum perfect phylogenetic forest problem. (English) Zbl 1260.92094 J. Comb. Optim. 16, No. 3, 229-247 (2008). MSC: 92D15 05C90 05C05 90C90 90C10 65Y20 PDFBibTeX XMLCite \textit{Y. Wu} and \textit{D. Gusfield}, J. Comb. Optim. 16, No. 3, 229--247 (2008; Zbl 1260.92094) Full Text: DOI
Pfaffelhuber, P.; Studeny, A. Approximating genealogies for partially linked neutral loci under a selective sweep. (English) Zbl 1125.92042 J. Math. Biol. 55, No. 3, 299-330 (2007). MSC: 92D10 92D15 60J70 60J80 60J85 PDFBibTeX XMLCite \textit{P. Pfaffelhuber} and \textit{A. Studeny}, J. Math. Biol. 55, No. 3, 299--330 (2007; Zbl 1125.92042) Full Text: DOI arXiv
Gusfield, Dan; Hickerson, Dean; Eddhu, Satish An efficiently computed lower bound on the number of recombinations in phylogenetic networks: theory and empirical study. (English) Zbl 1259.92077 Discrete Appl. Math. 155, No. 6-7, 806-830 (2007). MSC: 92D15 92C42 05C90 05C05 PDFBibTeX XMLCite \textit{D. Gusfield} et al., Discrete Appl. Math. 155, No. 6--7, 806--830 (2007; Zbl 1259.92077) Full Text: DOI
Gusfield, Dan; Bansal, Vikas A fundamental decomposition theory for phylogenetic networks and incompatible characters. (English) Zbl 1119.92352 Miyano, Satoru (ed.) et al., Research in computational molecular biology. 9th annual international conference, RECOMB 2005, Cambridge, MA, USA, May 14–18, 2005. Proceedings. Berlin: Springer (ISBN 3-540-25866-3/pbk). Lecture Notes in Computer Science 3500. Lecture Notes in Bioinformatics, 217-232 (2005). MSC: 92D15 92C40 92-08 PDFBibTeX XMLCite \textit{D. Gusfield} and \textit{V. Bansal}, Lect. Notes Comput. Sci. 3500, 217--232 (2005; Zbl 1119.92352) Full Text: DOI
Gusfield, Dan Optimal, efficient reconstruction of root-unknown phylogenetic networks with constrained and structured recombination. (English) Zbl 1068.92035 J. Comput. Syst. Sci. 70, No. 3, 381-398 (2005). MSC: 92D15 92-08 05C90 94C99 PDFBibTeX XMLCite \textit{D. Gusfield}, J. Comput. Syst. Sci. 70, No. 3, 381--398 (2005; Zbl 1068.92035) Full Text: DOI
Gusfield, Dan; Eddhu, Satish; Langley, Charles The fine structure of galls in phylogenetic networks. (English) Zbl 1402.92313 INFORMS J. Comput. 16, No. 4, 459-469 (2004). MSC: 92D15 05C90 92C42 92D10 PDFBibTeX XMLCite \textit{D. Gusfield} et al., INFORMS J. Comput. 16, No. 4, 459--469 (2004; Zbl 1402.92313) Full Text: DOI Link
Fearnhead, Paul Haplotypes: the joint distribution of alleles at linked loci. (English) Zbl 1028.92018 J. Appl. Probab. 40, No. 2, 505-512 (2003). Reviewer: R.E.Maiboroda (Kyïv) MSC: 92D10 60G10 60J85 92D15 60J10 PDFBibTeX XMLCite \textit{P. Fearnhead}, J. Appl. Probab. 40, No. 2, 505--512 (2003; Zbl 1028.92018) Full Text: DOI
Larribe, Fabrice; Lessard, Sabin; Schork, Nicholas J. Gene mapping via the ancestral recombination graph. (English) Zbl 1101.92306 Theor. Popul. Biol. 62, No. 2, 215-229 (2002). MSC: 92D15 05C90 65C05 PDFBibTeX XMLCite \textit{F. Larribe} et al., Theor. Popul. Biol. 62, No. 2, 215--229 (2002; Zbl 1101.92306) Full Text: DOI Link
Griffiths, R. C. The two-locus ancestral graph. (English) Zbl 0781.92022 Applied probability, Proc. Symp., Sheffield/UK 1990, IMS Lect. Notes, Monogr. Ser. 18, 100-117 (1991). MSC: 92D10 60J85 60J80 PDFBibTeX XMLCite \textit{R. C. Griffiths}, IMS Lect. Notes, Monogr. Ser. 18, 100--117 (1991; Zbl 0781.92022)