Alseth, Andrew; Hader, Daniel; Patitz, Matthew J. Self-replication via tile self-assembly (Extended Abstract). (English) Zbl 07741394 Lakin, Matthew R. (ed.) et al., 27th international conference on DNA computing and molecular programming. DNA 27, Oxford, UK (virtual conference), September 13–16, 2021. Wadern: Schloss Dagstuhl – Leibniz-Zentrum für Informatik. LIPIcs – Leibniz Int. Proc. Inform. 205, Article 3, 22 p. (2021). MSC: 68Q07 PDFBibTeX XMLCite \textit{A. Alseth} et al., LIPIcs -- Leibniz Int. Proc. Inform. 205, Article 3, 22 p. (2021; Zbl 07741394) Full Text: DOI arXiv
Hader, Daniel; Patitz, Matthew J.; Summers, Scott M. Fractal dimension of assemblies in the abstract tile assembly model. (English) Zbl 07553907 Kostitsyna, Irina et al., Unconventional computation and natural computation. 19th international conference, UCNC 2021, Espoo, Finland, October 18–22, 2021. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 12984, 116-130 (2021). MSC: 68Q07 68Q09 68Q10 68Q12 PDFBibTeX XMLCite \textit{D. Hader} et al., Lect. Notes Comput. Sci. 12984, 116--130 (2021; Zbl 07553907) Full Text: DOI
Hendricks, Jacob; Opseth, Joseph; Patitz, Matthew J.; Summers, Scott M. Hierarchical growth is necessary and (sometimes) sufficient to self-assemble discrete self-similar fractals. (English) Zbl 07802755 Nat. Comput. 19, No. 2, 357-374 (2020). MSC: 68Q07 28A80 PDFBibTeX XMLCite \textit{J. Hendricks} et al., Nat. Comput. 19, No. 2, 357--374 (2020; Zbl 07802755) Full Text: DOI
Durand-Lose, Jérôme; Hendricks, Jacob; Patitz, Matthew J.; Perkins, Ian; Sharp, Michael Self-assembly of 3-D structures using 2-D folding tiles. (English) Zbl 07802754 Nat. Comput. 19, No. 2, 337-355 (2020). MSC: 68Q07 PDFBibTeX XMLCite \textit{J. Durand-Lose} et al., Nat. Comput. 19, No. 2, 337--355 (2020; Zbl 07802754) Full Text: DOI
Geary, Cody (ed.); Patitz, Matthew J. (ed.) 26th international conference on DNA computing and molecular programming. DNA 26, September 14–17, 2020, Oxford, UK, virtual conference. Proceedings. (English) Zbl 1445.68016 LIPIcs – Leibniz International Proceedings in Informatics 174. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-95977-163-4). xiii, 11 articles, not consecutively paged, electronic only, open access (2020). MSC: 68-06 68Q07 00B25 PDFBibTeX XMLCite \textit{C. Geary} (ed.) and \textit{M. J. Patitz} (ed.), 26th international conference on DNA computing and molecular programming. DNA 26, September 14--17, 2020, Oxford, UK, virtual conference. Proceedings. Wadern: Schloss Dagstuhl -- Leibniz Zentrum für Informatik (2020; Zbl 1445.68016) Full Text: DOI Link
Patitz, Matthew (ed.); Stannett, Mike (ed.) Preface. (English) Zbl 07802510 Nat. Comput. 18, No. 1, 61-62 (2019). MSC: 68-06 68Q07 68Q09 00B25 PDFBibTeX XMLCite \textit{M. Patitz} (ed.) and \textit{M. Stannett} (ed.), Nat. Comput. 18, No. 1, 61--62 (2019; Zbl 07802510) Full Text: DOI
Patitz, Matthew J.; Schweller, Robert; Rogers, Trent A.; Summers, Scott M.; Winslow, Andrew Resiliency to multiple nucleation in temperature-1 self-assembly. (English) Zbl 1528.68123 Nat. Comput. 17, No. 1, 31-46 (2018). MSC: 68Q07 68Q09 PDFBibTeX XMLCite \textit{M. J. Patitz} et al., Nat. Comput. 17, No. 1, 31--46 (2018; Zbl 1528.68123) Full Text: DOI
Durand-Lose, Jérôme; Hendricks, Jacob; Patitz, Matthew J.; Perkins, Ian; Sharp, Michael Self-assembly of 3-D structures using 2-D folding tiles. (English) Zbl 1517.68118 Doty, David (ed.) et al., DNA computing and molecular programming. 24th international conference, DNA 24, Jinan, China, October 8–12, 2018. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11145, 105-121 (2018). MSC: 68Q07 PDFBibTeX XMLCite \textit{J. Durand-Lose} et al., Lect. Notes Comput. Sci. 11145, 105--121 (2018; Zbl 1517.68118) Full Text: DOI arXiv
Hendricks, Jacob; Opseth, Joseph; Patitz, Matthew J.; Summers, Scott M. Hierarchical growth is necessary and (sometimes) sufficient to self-assemble discrete self-similar fractals. (English) Zbl 1517.68125 Doty, David (ed.) et al., DNA computing and molecular programming. 24th international conference, DNA 24, Jinan, China, October 8–12, 2018. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11145, 87-104 (2018). MSC: 68Q07 28A80 PDFBibTeX XMLCite \textit{J. Hendricks} et al., Lect. Notes Comput. Sci. 11145, 87--104 (2018; Zbl 1517.68125) Full Text: DOI arXiv
Demaine, Erik D.; Hendricks, Jacob; Olsen, Meagan; Patitz, Matthew J.; Rogers, Trent A.; Schabanel, Nicolas; Seki, Shinnosuke; Thomas, Hadley Know when to fold ’em: self-assembly of shapes by folding in oritatami. (English) Zbl 1517.68117 Doty, David (ed.) et al., DNA computing and molecular programming. 24th international conference, DNA 24, Jinan, China, October 8–12, 2018. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 11145, 19-36 (2018). MSC: 68Q07 PDFBibTeX XMLCite \textit{E. D. Demaine} et al., Lect. Notes Comput. Sci. 11145, 19--36 (2018; Zbl 1517.68117) Full Text: DOI arXiv
Kari, Lila; Kopecki, Steffen; Meunier, Pierre-Étienne; Patitz, Matthew J.; Seki, Shinnosuke Binary pattern tile set synthesis is NP-hard. (English) Zbl 1370.68109 Algorithmica 78, No. 1, 1-46 (2017). MSC: 68Q17 05B45 68Q80 68T15 PDFBibTeX XMLCite \textit{L. Kari} et al., Algorithmica 78, No. 1, 1--46 (2017; Zbl 1370.68109) Full Text: DOI arXiv
Patitz, Matthew J.; Rogers, Trent A.; Schweller, Robert T.; Summers, Scott M.; Winslow, Andrew Resiliency to multiple nucleation in temperature-1 self-assembly. (English) Zbl 1451.68116 Rondelez, Yannick (ed.) et al., DNA computing and molecular programming. 22nd international conference, DNA 22, Munich, Germany, September 4–8, 2016. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 9818, 98-113 (2016). MSC: 68Q07 68U05 PDFBibTeX XMLCite \textit{M. J. Patitz} et al., Lect. Notes Comput. Sci. 9818, 98--113 (2016; Zbl 1451.68116) Full Text: DOI
Hendricks, Jacob; Olsen, Meagan; Patitz, Matthew J.; Rogers, Trent A.; Thomas, Hadley Hierarchical self-assembly of fractals with signal-passing tiles (extended abstract). (English) Zbl 1451.68114 Rondelez, Yannick (ed.) et al., DNA computing and molecular programming. 22nd international conference, DNA 22, Munich, Germany, September 4–8, 2016. Proceedings. Cham: Springer. Lect. Notes Comput. Sci. 9818, 82-97 (2016). MSC: 68Q07 28A80 68U05 PDFBibTeX XMLCite \textit{J. Hendricks} et al., Lect. Notes Comput. Sci. 9818, 82--97 (2016; Zbl 1451.68114) Full Text: DOI arXiv
Hendricks, Jacob; Patitz, Matthew J.; Rogers, Trent A.; Summers, Scott M. The power of duples (in self-assembly): it’s not so hip to be square. (English) Zbl 1423.68170 Cai, Zhipeng (ed.) et al., Computing and combinatorics. 20th international conference, COCOON 2014, Atlanta, GA, USA, August 4–6, 2014. Proceedings. Berlin: Springer. Lect. Notes Comput. Sci. 8591, 215-226 (2014). MSC: 68Q05 68Q10 92D20 PDFBibTeX XMLCite \textit{J. Hendricks} et al., Lect. Notes Comput. Sci. 8591, 215--226 (2014; Zbl 1423.68170) Full Text: DOI arXiv
Demaine, Erik D.; Demaine, Martin L.; Fekete, Sándor P.; Patitz, Matthew J.; Schweller, Robert T.; Winslow, Andrew; Woods, Damien One tile to rule them all: simulating any tile assembly system with a single universal tile. (English) Zbl 1410.68123 Esparza, Javier (ed.) et al., Automata, languages, and programming. 41st international colloquium, ICALP 2014, Copenhagen, Denmark, July 8–11, 2014. Proceedings, Part I. Berlin: Springer. Lect. Notes Comput. Sci. 8572, 368-379 (2014). MSC: 68Q05 92D20 PDFBibTeX XMLCite \textit{E. D. Demaine} et al., Lect. Notes Comput. Sci. 8572, 368--379 (2014; Zbl 1410.68123) Full Text: DOI Link
Cannon, Sarah; Demaine, Erik D.; Demaine, Martin L.; Eisenstat, Sarah; Patitz, Matthew J.; Schweller, Robert T.; Summers, Scott M.; Winslow, Andrew Two hands are better than one (up to constant factors): self-assembly in the 2HAM vs. aTAM. (English) Zbl 1354.68078 Portier, Natacha (ed.) et al., 30th international symposium on theoretical aspects of computer science, STACS’ 13, Kiel, Germany, February 27 – March 2, 2013. Wadern: Schloss Dagstuhl – Leibniz Zentrum für Informatik (ISBN 978-3-939897-50-7). LIPIcs – Leibniz International Proceedings in Informatics 20, 172-184 (2013). MSC: 68Q05 68Q10 68Q25 PDFBibTeX XMLCite \textit{S. Cannon} et al., LIPIcs -- Leibniz Int. Proc. Inform. 20, 172--184 (2013; Zbl 1354.68078) Full Text: DOI arXiv
Patitz, Matthew J. An introduction to tile-based self-assembly. (English) Zbl 1269.68052 Durand-Lose, Jérôme (ed.) et al., Unconventional computation and natural computation. 11th international conference, UCNC 2012, Orléan, France, September 3–7, 2012. Proceedings. Berlin: Springer (ISBN 978-3-642-32893-0/pbk). Lecture Notes in Computer Science 7445, 34-62 (2012). Reviewer: Gregory Loren McColm (Tampa) MSC: 68Q05 68Q10 82D80 PDFBibTeX XMLCite \textit{M. J. Patitz}, Lect. Notes Comput. Sci. 7445, 34--62 (2012; Zbl 1269.68052) Full Text: DOI
Patitz, Matthew J.; Summers, Scott M. Self-assembly of decidable sets. (English) Zbl 1217.68097 Nat. Comput. 10, No. 2, 853-877 (2011). MSC: 68Q05 05B45 68Q10 PDFBibTeX XMLCite \textit{M. J. Patitz} and \textit{S. M. Summers}, Nat. Comput. 10, No. 2, 853--877 (2011; Zbl 1217.68097) Full Text: DOI