Hengeveld, Simon B.; Merabti, Mathieu; Pascale, Fabien; Malliavin, Thérèse E. A study on the covalent geometry of proteins and its impact on distance geometry. (English) Zbl 07789331 Nielsen, Frank (ed.) et al., Geometric science of information. 6th international conference, GSI 2023, St. Malo, France, August 30 – September 1, 2023. Proceedings. Part II. Cham: Springer. Lect. Notes Comput. Sci. 14072, 520-530 (2023). MSC: 92D20 PDFBibTeX XMLCite \textit{S. B. Hengeveld} et al., Lect. Notes Comput. Sci. 14072, 520--530 (2023; Zbl 07789331) Full Text: DOI
Yoshioka, Hidekazu Optimal aquaculture planning while accounting for the size spectrum. (English) Zbl 1528.37079 SN Oper. Res. Forum 4, No. 3, Paper No. 61, 34 p. (2023). MSC: 37N40 37N25 49L20 62L15 90C39 92D40 PDFBibTeX XMLCite \textit{H. Yoshioka}, SN Oper. Res. Forum 4, No. 3, Paper No. 61, 34 p. (2023; Zbl 1528.37079) Full Text: DOI
Aragón-Artacho, Francisco J.; Censor, Yair; Gibali, Aviv; Torregrosa-Belén, David The superiorization method with restarted perturbations for split minimization problems with an application to radiotherapy treatment planning. (English) Zbl 1517.47121 Appl. Math. Comput. 440, Article ID 127627, 17 p. (2023). MSC: 47N10 90C05 90C25 90C49 92C50 92C55 PDFBibTeX XMLCite \textit{F. J. Aragón-Artacho} et al., Appl. Math. Comput. 440, Article ID 127627, 17 p. (2023; Zbl 1517.47121) Full Text: DOI arXiv
Camacho, A.; Díaz-Ocampo, E.; Jerez, S. Optimal control for a bone metastasis with radiotherapy model using a linear objective functional. (English) Zbl 1519.92092 Math. Model. Nat. Phenom. 17, Paper No. 32, 17 p. (2022). MSC: 92C50 92C32 49J30 PDFBibTeX XMLCite \textit{A. Camacho} et al., Math. Model. Nat. Phenom. 17, Paper No. 32, 17 p. (2022; Zbl 1519.92092) Full Text: DOI
Dias, Luis C.; Dias, Joana; Ventura, Tiago; Rocha, Humberto; Ferreira, Brígida; Khouri, Leila; Lopes, Maria do Carmo Learning target-based preferences through additive models: an application in radiotherapy treatment planning. (English) Zbl 1507.90199 Eur. J. Oper. Res. 302, No. 1, 270-279 (2022). MSC: 90C90 90B50 90C29 92C50 PDFBibTeX XMLCite \textit{L. C. Dias} et al., Eur. J. Oper. Res. 302, No. 1, 270--279 (2022; Zbl 1507.90199) Full Text: DOI
Jordán, Tibor; Tanigawa, Shin-ichi Globally rigid powers of graphs. (English) Zbl 1487.05185 J. Comb. Theory, Ser. B 155, 111-140 (2022). MSC: 05C62 52C25 05C10 92E10 05C92 PDFBibTeX XMLCite \textit{T. Jordán} and \textit{S.-i. Tanigawa}, J. Comb. Theory, Ser. B 155, 111--140 (2022; Zbl 1487.05185) Full Text: DOI
de Salles Neto, Luiz Leduino; Lavor, Carlile; Lodwick, Weldon A note on the Cayley-Menger determinant and the molecular distance geometry problem. (English) Zbl 1486.92336 Inf. Sci. 559, 1-7 (2021). MSC: 92E10 05C92 PDFBibTeX XMLCite \textit{L. L. de Salles Neto} et al., Inf. Sci. 559, 1--7 (2021; Zbl 1486.92336) Full Text: DOI
Yang, Yuwen; Rajgopal, Jayant Outreach strategies for vaccine distribution: a multi-period stochastic modeling approach. (English) Zbl 1466.90049 SN Oper. Res. Forum 2, No. 2, Paper No. 24, 26 p. (2021). MSC: 90B80 90C11 90C27 90C15 92C50 PDFBibTeX XMLCite \textit{Y. Yang} and \textit{J. Rajgopal}, SN Oper. Res. Forum 2, No. 2, Paper No. 24, 26 p. (2021; Zbl 1466.90049) Full Text: DOI arXiv
Lavor, Carlile; Souza, Michael; Carvalho, Luiz M.; Gonçalves, Douglas S.; Mucherino, Antonio Improving the sampling process in the interval branch-and-prune algorithm for the discretizable molecular distance geometry problem. (English) Zbl 1508.92186 Appl. Math. Comput. 389, Article ID 125586, 12 p. (2021). MSC: 92D20 51K05 65D18 PDFBibTeX XMLCite \textit{C. Lavor} et al., Appl. Math. Comput. 389, Article ID 125586, 12 p. (2021; Zbl 1508.92186) Full Text: DOI
Kiefer, Lukas; Petra, Stefania; Storath, Martin; Weinmann, Andreas Multi-channel Potts-based reconstruction for multi-spectral computed tomography. (English) Zbl 1460.92108 Inverse Probl. 37, No. 4, Article ID 045004, 39 p. (2021). MSC: 92C55 PDFBibTeX XMLCite \textit{L. Kiefer} et al., Inverse Probl. 37, No. 4, Article ID 045004, 39 p. (2021; Zbl 1460.92108) Full Text: DOI arXiv
Lavor, Carlile; Alves, Rafael; Souza, Michael; José, Luis Aragón NMR protein structure calculation and sphere intersections. (English) Zbl 1472.92167 Comput. Math. Biophys. 8, No. 1, 89-101 (2020). MSC: 92D20 51K05 PDFBibTeX XMLCite \textit{C. Lavor} et al., Comput. Math. Biophys. 8, No. 1, 89--101 (2020; Zbl 1472.92167) Full Text: DOI
Luo, Shousheng; Zhang, Yanchun; Zhou, Tie; Song, Jinping; Wang, Yanfei XCT image reconstruction by a modified superiorized iteration and theoretical analysis. (English) Zbl 1466.94007 Optim. Methods Softw. 35, No. 6, 1080-1097 (2020). Reviewer: Agnieszka Lisowska (Sosnowiec) MSC: 94A08 92C55 15A29 65K10 68U10 PDFBibTeX XMLCite \textit{S. Luo} et al., Optim. Methods Softw. 35, No. 6, 1080--1097 (2020; Zbl 1466.94007) Full Text: DOI
Shen, Jiayu An uncertain sustainable supply chain network. (English) Zbl 1508.90006 Appl. Math. Comput. 378, Article ID 125213, 12 p. (2020). MSC: 90B06 90C15 90C29 90C59 92D40 PDFBibTeX XMLCite \textit{J. Shen}, Appl. Math. Comput. 378, Article ID 125213, 12 p. (2020; Zbl 1508.90006) Full Text: DOI
Saha, Esha; Ray, Pradip Kumar Modelling and analysis of healthcare inventory management systems. (English) Zbl 1472.90010 Opsearch 56, No. 4, 1179-1198 (2019). MSC: 90B05 90C40 92B05 PDFBibTeX XMLCite \textit{E. Saha} and \textit{P. K. Ray}, Opsearch 56, No. 4, 1179--1198 (2019; Zbl 1472.90010) Full Text: DOI
Bernardi, Simona; Mahulea, Cristian; Albareda, Jorge Toward a decision support system for the clinical pathways assessment. (English) Zbl 1426.91059 Discrete Event Dyn. Syst. 29, No. 1, 91-125 (2019). MSC: 91B06 92C50 68Q85 PDFBibTeX XMLCite \textit{S. Bernardi} et al., Discrete Event Dyn. Syst. 29, No. 1, 91--125 (2019; Zbl 1426.91059) Full Text: DOI Link
Nagurney, Anna; Dutta, Pritha Supply chain network competition among blood service organizations: a generalized Nash equilibrium framework. (English) Zbl 1426.91013 Ann. Oper. Res. 275, No. 2, 551-586 (2019). MSC: 91A10 90B05 92C50 PDFBibTeX XMLCite \textit{A. Nagurney} and \textit{P. Dutta}, Ann. Oper. Res. 275, No. 2, 551--586 (2019; Zbl 1426.91013) Full Text: DOI Link
Lavor, Carlile; Souza, Michael; Carvalho, Luiz Mariano; Liberti, Leo On the polynomiality of finding \(^K\text{DMDGP}\) re-orders. (English) Zbl 1419.05037 Discrete Appl. Math. 267, 190-194 (2019). MSC: 05B25 68Q17 05C90 92E10 92D20 PDFBibTeX XMLCite \textit{C. Lavor} et al., Discrete Appl. Math. 267, 190--194 (2019; Zbl 1419.05037) Full Text: DOI
Mahlbacher, Grace E.; Reihmer, Kara C.; Frieboes, Hermann B. Mathematical modeling of tumor-immune cell interactions. (English) Zbl 1411.92081 J. Theor. Biol. 469, 47-60 (2019). MSC: 92C37 35Q92 PDFBibTeX XMLCite \textit{G. E. Mahlbacher} et al., J. Theor. Biol. 469, 47--60 (2019; Zbl 1411.92081) Full Text: DOI Link
Breedveld, Sebastiaan; Craft, David; van Haveren, Rens; Heijmen, Ben Multi-criteria optimization and decision-making in radiotherapy. (English) Zbl 1430.90503 Eur. J. Oper. Res. 277, No. 1, 1-19 (2019). MSC: 90C29 92C50 PDFBibTeX XMLCite \textit{S. Breedveld} et al., Eur. J. Oper. Res. 277, No. 1, 1--19 (2019; Zbl 1430.90503) Full Text: DOI
Lavor, Carlile; Alves, Rafael Oriented conformal geometric algebra and the molecular distance geometry problem. (English) Zbl 1410.92086 Adv. Appl. Clifford Algebr. 29, No. 1, Paper No. 9, 15 p. (2019). MSC: 92D20 15A99 PDFBibTeX XMLCite \textit{C. Lavor} and \textit{R. Alves}, Adv. Appl. Clifford Algebr. 29, No. 1, Paper No. 9, 15 p. (2019; Zbl 1410.92086) Full Text: DOI
Lavor, Carlile; Liberti, Leo; Donald, Bruce; Worley, Bradley; Bardiaux, Benjamin; Malliavin, Thérèse E.; Nilges, Michael Minimal NMR distance information for rigidity of protein graphs. (English) Zbl 1405.05178 Discrete Appl. Math. 256, 91-104 (2019). MSC: 05C90 05C12 92D20 92E10 PDFBibTeX XMLCite \textit{C. Lavor} et al., Discrete Appl. Math. 256, 91--104 (2019; Zbl 1405.05178) Full Text: DOI Link
Wang, Li-Li; Huang, Nan-Jing; O’Regan, Donal Dynamics of a stochastic SIQR epidemic model with saturated incidence rate. (English) Zbl 1499.34287 Filomat 32, No. 15, 5239-5253 (2018). MSC: 34C60 34D05 34F05 60H10 92D30 PDFBibTeX XMLCite \textit{L.-L. Wang} et al., Filomat 32, No. 15, 5239--5253 (2018; Zbl 1499.34287) Full Text: DOI
Chang, Shuhua; Qin, Weihua; Wang, Xinyu Dynamic optimal strategies in transboundary pollution game under learning by doing. (English) Zbl 1514.91037 Physica A 490, 139-147 (2018). MSC: 91A80 91A23 91B76 92D40 PDFBibTeX XMLCite \textit{S. Chang} et al., Physica A 490, 139--147 (2018; Zbl 1514.91037) Full Text: DOI
Billinge, Simon J. L.; Duxbury, Phillip M.; Gonçalves, Douglas S.; Lavor, Carlile; Mucherino, Antonio Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures. (English) Zbl 1429.51011 Ann. Oper. Res. 271, No. 1, 161-203 (2018). Reviewer: Niko Tratnik (Maribor) MSC: 51P05 92E10 82D80 51K99 PDFBibTeX XMLCite \textit{S. J. L. Billinge} et al., Ann. Oper. Res. 271, No. 1, 161--203 (2018; Zbl 1429.51011) Full Text: DOI
Costa, T. M.; Bouwmeester, H.; Lodwick, W. A.; Lavor, C. Calculating the possible conformations arising from uncertainty in the molecular distance geometry problem using constraint interval analysis. (English) Zbl 1444.92075 Inf. Sci. 415-416, 41-52 (2017). MSC: 92D20 PDFBibTeX XMLCite \textit{T. M. Costa} et al., Inf. Sci. 415--416, 41--52 (2017; Zbl 1444.92075) Full Text: DOI
Tateishi, Kiyoko; Yamaguchi, Yusaku; Abou Al-Ola, Omar M.; Yoshinaga, Tetsuya Continuous analog of accelerated OS-EM algorithm for computed tomography. (English) Zbl 1426.94024 Math. Probl. Eng. 2017, Article ID 1564123, 8 p. (2017). MSC: 94A08 65J15 92C55 34D20 65L09 PDFBibTeX XMLCite \textit{K. Tateishi} et al., Math. Probl. Eng. 2017, Article ID 1564123, 8 p. (2017; Zbl 1426.94024) Full Text: DOI
Alves, Rafael; Lavor, Carlile Geometric algebra to model uncertainties in the discretizable molecular distance geometry problem. (English) Zbl 1373.92148 Adv. Appl. Clifford Algebr. 27, No. 1, 439-452 (2017). MSC: 92E10 PDFBibTeX XMLCite \textit{R. Alves} and \textit{C. Lavor}, Adv. Appl. Clifford Algebr. 27, No. 1, 439--452 (2017; Zbl 1373.92148) Full Text: DOI
D’Ambrosio, Claudia; Vu, Ky; Lavor, Carlile; Liberti, Leo; Maculan, Nelson New error measures and methods for realizing protein graphs from distance data. (English) Zbl 1358.05085 Discrete Comput. Geom. 57, No. 2, 371-418 (2017). MSC: 05C12 05C10 05C90 92D20 90C20 90C22 PDFBibTeX XMLCite \textit{C. D'Ambrosio} et al., Discrete Comput. Geom. 57, No. 2, 371--418 (2017; Zbl 1358.05085) Full Text: DOI arXiv
Billinge, Simon J. L.; Duxbury, Phillip M.; Gonçalves, Douglas S.; Lavor, Carlile; Mucherino, Antonio Assigned and unassigned distance geometry: applications to biological molecules and nanostructures. (English) Zbl 1364.51005 4OR 14, No. 4, 337-376 (2016). Reviewer: Niko Tratnik (Maribor) MSC: 51K99 51P05 92E10 82D80 92-02 51-02 51K05 PDFBibTeX XMLCite \textit{S. J. L. Billinge} et al., 4OR 14, No. 4, 337--376 (2016; Zbl 1364.51005) Full Text: DOI Link
Feizabadi, R.; Bagherian, M.; Vaziri, H. R.; Salahi, M. A new mathematical modeling for pure parsimony haplotyping problem. (English) Zbl 1348.92108 Math. Biosci. 281, 92-97 (2016). MSC: 92D10 92C50 90C11 PDFBibTeX XMLCite \textit{R. Feizabadi} et al., Math. Biosci. 281, 92--97 (2016; Zbl 1348.92108) Full Text: DOI
de Souza, Regiane Máximo; Morabito, Reinaldo; Chiyoshi, Fernando Y.; Iannoni, Ana Paula Incorporating priorities for waiting customers in the hypercube queuing model with application to an emergency medical service system in Brazil. (English) Zbl 1341.90089 Eur. J. Oper. Res. 242, No. 1, 274-285 (2015). MSC: 90B90 90B22 92C50 PDFBibTeX XMLCite \textit{R. M. de Souza} et al., Eur. J. Oper. Res. 242, No. 1, 274--285 (2015; Zbl 1341.90089) Full Text: DOI
Fujimoto, Ken’ichi; Tanaka, Yoshihiro; Abou Al-Ola, Omar M.; Yoshinaga, Tetsuya Continuous-time method and its discretization to inverse problem of intensity-modulated radiation therapy treatment planning. (English) Zbl 1457.92077 Commun. Nonlinear Sci. Numer. Simul. 19, No. 6, 1996-2004 (2014). MSC: 92C50 PDFBibTeX XMLCite \textit{K. Fujimoto} et al., Commun. Nonlinear Sci. Numer. Simul. 19, No. 6, 1996--2004 (2014; Zbl 1457.92077) Full Text: DOI
Schiavazzi, Daniele; Coletti, Filippo; Iaccarino, Gianluca; Eaton, John K. A matching pursuit approach to solenoidal filtering of three-dimensional velocity measurements. (English) Zbl 1349.76161 J. Comput. Phys. 263, 206-221 (2014). MSC: 76Mxx 76W05 94A08 92C55 PDFBibTeX XMLCite \textit{D. Schiavazzi} et al., J. Comput. Phys. 263, 206--221 (2014; Zbl 1349.76161) Full Text: DOI Link
Andersen, Martin S.; Hansen, Per Christian Generalized row-action methods for tomographic imaging. (English) Zbl 1302.65285 Numer. Algorithms 67, No. 1, 121-144 (2014). Reviewer: Josef Kofroň (Praha) MSC: 65R32 90C52 65K05 65R10 44A12 92C55 PDFBibTeX XMLCite \textit{M. S. Andersen} and \textit{P. C. Hansen}, Numer. Algorithms 67, No. 1, 121--144 (2014; Zbl 1302.65285) Full Text: DOI arXiv
Liberti, Leo; Masson, Benoît; Lee, Jon; Lavor, Carlile; Mucherino, Antonio On the number of realizations of certain Henneberg graphs arising in protein conformation. (English) Zbl 1288.05121 Discrete Appl. Math. 165, 213-232 (2014). MSC: 05C22 05C12 05C90 92D20 PDFBibTeX XMLCite \textit{L. Liberti} et al., Discrete Appl. Math. 165, 213--232 (2014; Zbl 1288.05121) Full Text: DOI
Luo, Shousheng; Zhou, Tie Superiorization of EM algorithm and its application in single-photon emission computed tomography (SPECT). (English) Zbl 1301.92043 Inverse Probl. Imaging 8, No. 1, 223-246 (2014). MSC: 92C55 94A08 65R10 65R32 PDFBibTeX XMLCite \textit{S. Luo} and \textit{T. Zhou}, Inverse Probl. Imaging 8, No. 1, 223--246 (2014; Zbl 1301.92043) Full Text: DOI arXiv
Festa, P. A biased random-key genetic algorithm for data clustering. (English) Zbl 1308.92010 Math. Biosci. 245, No. 1, 76-85 (2013). MSC: 92B15 62H30 PDFBibTeX XMLCite \textit{P. Festa}, Math. Biosci. 245, No. 1, 76--85 (2013; Zbl 1308.92010) Full Text: DOI
Divnić, Tomica R.; Pavlović, Ljiljana R. Proof of the first part of the conjecture of Aouchiche and Hansen about the Randić index. (English) Zbl 1263.05050 Discrete Appl. Math. 161, No. 7-8, 953-960 (2013). MSC: 05C35 05C07 05C90 90C27 92E10 PDFBibTeX XMLCite \textit{T. R. Divnić} and \textit{L. R. Pavlović}, Discrete Appl. Math. 161, No. 7--8, 953--960 (2013; Zbl 1263.05050) Full Text: DOI
Lavor, Carlile; Liberti, Leo; Maculan, Nelson; Mucherino, Antonio Recent advances on the discretizable molecular distance geometry problem. (English) Zbl 1253.05132 Eur. J. Oper. Res. 219, No. 3, 698-706 (2012). MSC: 05C90 92E10 05C62 PDFBibTeX XMLCite \textit{C. Lavor} et al., Eur. J. Oper. Res. 219, No. 3, 698--706 (2012; Zbl 1253.05132) Full Text: DOI
Chou, Chun-An; Chaovalitwongse, Wanpracha Art; Berger-Wolf, Tanya Y.; Dasgupta, Bhaskar; Ashley, Mary V. Capacitated clustering problem in computational biology: combinatorial and statistical approach for sibling reconstruction. (English) Zbl 1251.90393 Comput. Oper. Res. 39, No. 3, 609-619 (2012). MSC: 90C57 92B15 62H30 PDFBibTeX XMLCite \textit{C.-A. Chou} et al., Comput. Oper. Res. 39, No. 3, 609--619 (2012; Zbl 1251.90393) Full Text: DOI
Mousavi, Sayyed Rasoul; Esfahani, Navid Nasr A GRASP algorithm for the closest string problem using a probability-based heuristic. (English) Zbl 1251.90332 Comput. Oper. Res. 39, No. 2, 238-248 (2012). MSC: 90C27 92D20 68T05 90C59 PDFBibTeX XMLCite \textit{S. R. Mousavi} and \textit{N. N. Esfahani}, Comput. Oper. Res. 39, No. 2, 238--248 (2012; Zbl 1251.90332) Full Text: DOI
Rocha, H.; Dias, J. M.; Ferreira, B. C.; Lopes, M. C. Combinatorial optimization for an improved transition from fluence optimization to fluence delivery in IMRT treatment planning. (English) Zbl 1252.90072 Optimization 61, No. 8, 969-987 (2012). MSC: 90C27 90C59 90C11 92C05 92C50 PDFBibTeX XMLCite \textit{H. Rocha} et al., Optimization 61, No. 8, 969--987 (2012; Zbl 1252.90072) Full Text: DOI
Marshall, Adele H.; Zenga, Mariangela Experimenting with the Coxian phase-type distribution to uncover suitable fits. (English) Zbl 1241.62160 Methodol. Comput. Appl. Probab. 14, No. 1, 71-86 (2012). MSC: 62P10 62H10 62N02 92C50 62H12 62F10 65C60 PDFBibTeX XMLCite \textit{A. H. Marshall} and \textit{M. Zenga}, Methodol. Comput. Appl. Probab. 14, No. 1, 71--86 (2012; Zbl 1241.62160) Full Text: DOI
Blazewicz, Jacek; Formanowicz, Piotr; Kedziora, Pawel; Marciniak, Pawel; Taront, Przemyslaw Adaptive memory programming: local search parallel algorithms for phylogenetic tree construction. (English) Zbl 1214.92055 Ann. Oper. Res. 183, 75-94 (2011). MSC: 92D15 65Y05 92C40 PDFBibTeX XMLCite \textit{J. Blazewicz} et al., Ann. Oper. Res. 183, 75--94 (2011; Zbl 1214.92055) Full Text: DOI
Lavor, C.; Mucherino, A.; Liberti, L.; Maculan, N. On the computation of protein backbones by using artificial backbones of hydrogens. (English) Zbl 1219.90209 J. Glob. Optim. 50, No. 2, 329-344 (2011). MSC: 90C90 90C35 92E10 PDFBibTeX XMLCite \textit{C. Lavor} et al., J. Glob. Optim. 50, No. 2, 329--344 (2011; Zbl 1219.90209) Full Text: DOI
Picard, Nicolas; Chagneau, Pierrette; Mortier, Frédéric; Bar-Hen, Avner Finding confidence limits on population growth rates: bootstrap and analytic methods. (English) Zbl 1187.92070 Math. Biosci. 219, No. 1, 23-31 (2009). MSC: 92D25 62P10 92D40 PDFBibTeX XMLCite \textit{N. Picard} et al., Math. Biosci. 219, No. 1, 23--31 (2009; Zbl 1187.92070) Full Text: DOI HAL
Liberatore, Matthew J.; Nydick, Robert L. The analytic hierarchy process in medical and health care decision making: A literature review. (English) Zbl 1147.90302 Eur. J. Oper. Res. 189, No. 1, 194-207 (2008). MSC: 90-03 01A65 90B50 92C99 PDFBibTeX XMLCite \textit{M. J. Liberatore} and \textit{R. L. Nydick}, Eur. J. Oper. Res. 189, No. 1, 194--207 (2008; Zbl 1147.90302) Full Text: DOI
Mammadov, M. A.; Rubinov, A. M.; Yearwood, J. The study of drug-reaction relationships using global optimization techniques. (English) Zbl 1116.92034 Optim. Methods Softw. 22, No. 1, 99-126 (2007). MSC: 92C50 65K10 90C90 PDFBibTeX XMLCite \textit{M. A. Mammadov} et al., Optim. Methods Softw. 22, No. 1, 99--126 (2007; Zbl 1116.92034) Full Text: DOI