Shi, Yang; Shi, Weiping; Wang, Mengqiao; Lee, Ji-Hyun; Kang, Huining; Jiang, Hui Accurate and fast small \(p\)-value estimation for permutation tests in high-throughput genomic data analysis with the cross-entropy method. (English) Zbl 07784216 Stat. Appl. Genet. Mol. Biol. 22, No. 1, Article ID 20210067, 22 p. (2023). MSC: 92D20 62P10 PDFBibTeX XMLCite \textit{Y. Shi} et al., Stat. Appl. Genet. Mol. Biol. 22, No. 1, Article ID 20210067, 22 p. (2023; Zbl 07784216) Full Text: DOI
Tsiligianni, Christiana; Tsiligiannis, Aristeides; Tsiliyannis, Christos A stochastic inventory model of COVID-19 and robust, real-time identification of carriers at large and infection rate via asymptotic laws. (English) Zbl 1524.92114 Eur. J. Oper. Res. 304, No. 1, 42-56 (2023). MSC: 92D30 90B05 90B22 PDFBibTeX XMLCite \textit{C. Tsiligianni} et al., Eur. J. Oper. Res. 304, No. 1, 42--56 (2023; Zbl 1524.92114) Full Text: DOI
Ballif, Guillaume; Clément, Frédérique; Yvinec, Romain Averaging of a stochastic slow-fast model for population dynamics: application to the development of ovarian follicles. (English) Zbl 1486.92147 SIAM J. Appl. Math. 82, No. 1, 359-380 (2022). MSC: 92D25 92C15 60G10 60J28 PDFBibTeX XMLCite \textit{G. Ballif} et al., SIAM J. Appl. Math. 82, No. 1, 359--380 (2022; Zbl 1486.92147) Full Text: DOI
Budhiraja, Amarjit; Fraiman, Nicolas; Waterbury, Adam Approximating quasi-stationary distributions with interacting reinforced random walks. (English) Zbl 1482.60097 ESAIM, Probab. Stat. 26, 69-125 (2022). MSC: 60J10 34F05 60F10 92D25 PDFBibTeX XMLCite \textit{A. Budhiraja} et al., ESAIM, Probab. Stat. 26, 69--125 (2022; Zbl 1482.60097) Full Text: DOI arXiv
Goda, Takashi; Hironaka, Tomohiko; Kitade, Wataru; Foster, Adam Unbiased MLMC stochastic gradient-based optimization of Bayesian experimental designs. (English) Zbl 1484.62101 SIAM J. Sci. Comput. 44, No. 1, A286-A311 (2022). MSC: 62K05 62L20 65C05 92C45 94A17 PDFBibTeX XMLCite \textit{T. Goda} et al., SIAM J. Sci. Comput. 44, No. 1, A286--A311 (2022; Zbl 1484.62101) Full Text: DOI arXiv
Wang, Ting; Rathinam, Muruhan On the validity of the Girsanov transformation method for sensitivity analysis of stochastic chemical reaction networks. (English) Zbl 1496.60079 Stochastics 93, No. 8, 1227-1248 (2021). MSC: 60H30 60J27 92E20 PDFBibTeX XMLCite \textit{T. Wang} and \textit{M. Rathinam}, Stochastics 93, No. 8, 1227--1248 (2021; Zbl 1496.60079) Full Text: DOI arXiv
Puchhammer, Florian; Ben Abdellah, Amal; L’Ecuyer, Pierre Variance reduction with array-RQMC for tau-leaping simulation of stochastic biological and chemical reaction networks. (English) Zbl 1470.92125 Bull. Math. Biol. 83, No. 8, Paper No. 91, 31 p. (2021). MSC: 92C42 92C40 92E20 60J22 65C05 PDFBibTeX XMLCite \textit{F. Puchhammer} et al., Bull. Math. Biol. 83, No. 8, Paper No. 91, 31 p. (2021; Zbl 1470.92125) Full Text: DOI arXiv Link
Ben Hammouda, Chiheb; Ben Rached, Nadhir; Tempone, Raúl Importance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networks. (English) Zbl 1471.60105 Stat. Comput. 30, No. 6, 1665-1689 (2020). MSC: 60H35 60J27 60J74 92C40 PDFBibTeX XMLCite \textit{C. Ben Hammouda} et al., Stat. Comput. 30, No. 6, 1665--1689 (2020; Zbl 1471.60105) Full Text: DOI arXiv
Gao, Han; Zhu, Xueyu; Wang, Jian-Xun A bi-fidelity surrogate modeling approach for uncertainty propagation in three-dimensional hemodynamic simulations. (English) Zbl 1442.76163 Comput. Methods Appl. Mech. Eng. 366, Article ID 113047, 22 p. (2020). MSC: 76Z05 92-10 92C35 PDFBibTeX XMLCite \textit{H. Gao} et al., Comput. Methods Appl. Mech. Eng. 366, Article ID 113047, 22 p. (2020; Zbl 1442.76163) Full Text: DOI arXiv
Ascione, Giacomo; Pirozzi, Enrica On a stochastic neuronal model integrating correlated inputs. (English) Zbl 1497.92038 Math. Biosci. Eng. 16, No. 5, 5206-5225 (2019). MSC: 92C20 60J60 PDFBibTeX XMLCite \textit{G. Ascione} and \textit{E. Pirozzi}, Math. Biosci. Eng. 16, No. 5, 5206--5225 (2019; Zbl 1497.92038) Full Text: DOI
Maginnis, P. A.; West, M.; Dullerud, G. E. Exact variance-reduced simulation of lattice continuous-time Markov chains with applications in reaction networks. (English) Zbl 1422.92056 Bull. Math. Biol. 81, No. 8, 3159-3184 (2019). MSC: 92C42 92C40 60J28 92-08 PDFBibTeX XMLCite \textit{P. A. Maginnis} et al., Bull. Math. Biol. 81, No. 8, 3159--3184 (2019; Zbl 1422.92056) Full Text: DOI
Anderson, David F.; Yuan, Chaojie Low variance couplings for stochastic models of intracellular processes with time-dependent rate functions. (English) Zbl 1422.92065 Bull. Math. Biol. 81, No. 8, 2902-2930 (2019). MSC: 92C45 92C37 65C05 PDFBibTeX XMLCite \textit{D. F. Anderson} and \textit{C. Yuan}, Bull. Math. Biol. 81, No. 8, 2902--2930 (2019; Zbl 1422.92065) Full Text: DOI arXiv
Kim, Song-Hee; Whitt, Ward; Cha, Won Chul A data-driven model of an appointment-generated arrival process at an outpatient clinic. (English) Zbl 1446.90090 INFORMS J. Comput. 30, No. 1, 181-199 (2018). MSC: 90B36 92C50 PDFBibTeX XMLCite \textit{S.-H. Kim} et al., INFORMS J. Comput. 30, No. 1, 181--199 (2018; Zbl 1446.90090) Full Text: DOI Link
Chen, Jing Voon; Higle, Julia L.; Hintlian, Michael A systematic approach for examining the impact of calibration uncertainty in disease modeling. (English) Zbl 1483.92076 Comput. Manag. Sci. 15, No. 3-4, 541-561 (2018). MSC: 92C50 62P10 PDFBibTeX XMLCite \textit{J. V. Chen} et al., Comput. Manag. Sci. 15, No. 3--4, 541--561 (2018; Zbl 1483.92076) Full Text: DOI
Chen, Li; Knapp, Stephan Modeling of a diffusion with aggregation: rigorous derivation and numerical simulation. (English) Zbl 1404.35434 ESAIM, Math. Model. Numer. Anal. 52, No. 2, 567-593 (2018). MSC: 35Q70 82C22 65M06 60J65 92C17 35Q92 PDFBibTeX XMLCite \textit{L. Chen} and \textit{S. Knapp}, ESAIM, Math. Model. Numer. Anal. 52, No. 2, 567--593 (2018; Zbl 1404.35434) Full Text: DOI arXiv
Anderson, David F.; Higham, Desmond J.; Sun, Yu Computational complexity analysis for Monte Carlo approximations of classically scaled population processes. (English) Zbl 1401.60130 Multiscale Model. Simul. 16, No. 3, 1206-1226 (2018). MSC: 60H35 65C05 92C40 PDFBibTeX XMLCite \textit{D. F. Anderson} et al., Multiscale Model. Simul. 16, No. 3, 1206--1226 (2018; Zbl 1401.60130) Full Text: DOI arXiv
Eldon, Bjarki; Stephan, Wolfgang Evolution of highly fecund haploid populations. (English) Zbl 1397.92486 Theor. Popul. Biol. 119, 48-56 (2018). MSC: 92D15 92D10 62P10 PDFBibTeX XMLCite \textit{B. Eldon} and \textit{W. Stephan}, Theor. Popul. Biol. 119, 48--56 (2018; Zbl 1397.92486) Full Text: DOI
Pellacci, Benedetta; Verzini, Gianmaria Best dispersal strategies in spatially heterogeneous environments: optimization of the principal eigenvalue for indefinite fractional Neumann problems. (English) Zbl 1390.35404 J. Math. Biol. 76, No. 6, 1357-1386 (2018). MSC: 35R11 35P15 47A75 92D25 PDFBibTeX XMLCite \textit{B. Pellacci} and \textit{G. Verzini}, J. Math. Biol. 76, No. 6, 1357--1386 (2018; Zbl 1390.35404) Full Text: DOI arXiv
Spiliopoulos, K. Importance sampling for metastable and multiscale dynamical systems. (English) Zbl 1401.92007 Holcman, David (ed.), Stochastic processes, multiscale modeling, and numerical methods for computational cellular biology. Cham: Springer (ISBN 978-3-319-62626-0/hbk; 978-3-319-62627-7/ebook). 29-53 (2017). MSC: 92B15 62P10 62D05 PDFBibTeX XMLCite \textit{K. Spiliopoulos}, in: Stochastic processes, multiscale modeling, and numerical methods for computational cellular biology. Cham: Springer. 29--53 (2017; Zbl 1401.92007) Full Text: DOI arXiv
Robatto, Roberto; Szentes, Balázs On the biological foundation of risk preferences. (English) Zbl 1397.92599 J. Econ. Theory 172, 410-422 (2017). MSC: 92D25 91B16 92D15 PDFBibTeX XMLCite \textit{R. Robatto} and \textit{B. Szentes}, J. Econ. Theory 172, 410--422 (2017; Zbl 1397.92599) Full Text: DOI Link
Ben Hammouda, Chiheb; Moraes, Alvaro; Tempone, Raúl Multilevel hybrid split-step implicit tau-leap. (English) Zbl 1357.65005 Numer. Algorithms 74, No. 2, 527-560 (2017). MSC: 65C05 60J75 60J27 65G20 92C40 60K35 92C45 PDFBibTeX XMLCite \textit{C. Ben Hammouda} et al., Numer. Algorithms 74, No. 2, 527--560 (2017; Zbl 1357.65005) Full Text: DOI arXiv
Lajoie, Guillaume; Young, Lai-Sang Dynamic signal tracking in a simple V1 spiking model. (English) Zbl 1414.92103 Neural Comput. 28, No. 9, 1985-2010 (2016). MSC: 92C20 91E30 92B20 PDFBibTeX XMLCite \textit{G. Lajoie} and \textit{L.-S. Young}, Neural Comput. 28, No. 9, 1985--2010 (2016; Zbl 1414.92103) Full Text: DOI arXiv
Wang, Ting; Rathinam, Muruhan Efficiency of the Girsanov transformation approach for parametric sensitivity analysis of stochastic chemical kinetics. (English) Zbl 1355.92046 SIAM/ASA J. Uncertain. Quantif. 4, 1288-1322 (2016). MSC: 92C45 92E20 60H35 65C05 PDFBibTeX XMLCite \textit{T. Wang} and \textit{M. Rathinam}, SIAM/ASA J. Uncertain. Quantif. 4, 1288--1322 (2016; Zbl 1355.92046) Full Text: DOI arXiv
Hooker, Giles; Lin, Kevin K.; Rogers, Bruce Control theory and experimental design in diffusion processes. (English) Zbl 1327.62437 SIAM/ASA J. Uncertain. Quantif. 3, 234-264 (2015). MSC: 62K05 62L05 93E20 92C20 92D25 49L20 49M25 PDFBibTeX XMLCite \textit{G. Hooker} et al., SIAM/ASA J. Uncertain. Quantif. 3, 234--264 (2015; Zbl 1327.62437) Full Text: DOI arXiv
Louhichi, Sana; Ycart, Bernard Exponential growth of bifurcating processes with ancestral dependence. (English) Zbl 1318.60088 Adv. Appl. Probab. 47, No. 2, 545-564 (2015). MSC: 60J80 60J85 92C17 92D25 PDFBibTeX XMLCite \textit{S. Louhichi} and \textit{B. Ycart}, Adv. Appl. Probab. 47, No. 2, 545--564 (2015; Zbl 1318.60088) Full Text: DOI arXiv Euclid
Kang, Hye-Won; Kurtz, Thomas G.; Popovic, Lea Central limit theorems and diffusion approximations for multiscale Markov chain models. (English) Zbl 1319.60045 Ann. Appl. Probab. 24, No. 2, 721-759 (2014). Reviewer: Erich Häusler (Gießen) MSC: 60F05 60F17 60J60 60G44 60J27 60J28 76V05 80A30 92C45 92C37 92E20 58J65 PDFBibTeX XMLCite \textit{H.-W. Kang} et al., Ann. Appl. Probab. 24, No. 2, 721--759 (2014; Zbl 1319.60045) Full Text: DOI arXiv Euclid
Pokalyuk, Cornelia; Mathew, Lisha A.; Metzler, Dirk; Pfaffelhuber, Peter Competing islands limit the rate of adaptation in structured populations. (English) Zbl 1303.92106 Theor. Popul. Biol. 90, 1-11 (2013). MSC: 92D25 92D15 PDFBibTeX XMLCite \textit{C. Pokalyuk} et al., Theor. Popul. Biol. 90, 1--11 (2013; Zbl 1303.92106) Full Text: DOI
Dayar, Tuğrul; Orhan, M. Can Kronecker-based infinite level-dependent QBD processes. (English) Zbl 1268.60099 J. Appl. Probab. 49, No. 4, 1166-1187 (2012). Reviewer: R. E. Maiboroda (Kyïv) MSC: 60J22 60J28 92C45 92D25 PDFBibTeX XMLCite \textit{T. Dayar} and \textit{M. C. Orhan}, J. Appl. Probab. 49, No. 4, 1166--1187 (2012; Zbl 1268.60099) Full Text: DOI Euclid
Mufudza, Chipo; Sorofa, Walter; Chiyaka, Edward T. Assessing the effects of estrogen on the dynamics of breast cancer. (English) Zbl 1254.92048 Comput. Math. Methods Med. 2012, Article ID 473572, 14 p. (2012). MSC: 92C50 37N25 PDFBibTeX XMLCite \textit{C. Mufudza} et al., Comput. Math. Methods Med. 2012, Article ID 473572, 14 p. (2012; Zbl 1254.92048) Full Text: DOI
Leviyang, Sivan The coalescence of intrahost HIV lineages under symmetric CTL attack. (English) Zbl 1254.92066 Bull. Math. Biol. 74, No. 8, 1818-1856 (2012). MSC: 92C60 92C50 60H10 60G55 05C90 PDFBibTeX XMLCite \textit{S. Leviyang}, Bull. Math. Biol. 74, No. 8, 1818--1856 (2012; Zbl 1254.92066) Full Text: DOI arXiv
Steinsaltz, David; Tuljapurkar, Shripad; Horvitz, Carol Derivatives of the stochastic growth rate. (English) Zbl 1403.92268 Theor. Popul. Biol. 80, No. 1, 1-15 (2011). MSC: 92D25 92D40 60J20 PDFBibTeX XMLCite \textit{D. Steinsaltz} et al., Theor. Popul. Biol. 80, No. 1, 1--15 (2011; Zbl 1403.92268) Full Text: DOI arXiv Link
Dayar, Tuǧrul; Sandmann, Werner; Spieler, David; Wolf, Verena Infinite level-dependent QBD processes and matrix-analytic solutions for stochastic chemical kinetics. (English) Zbl 1233.60042 Adv. Appl. Probab. 43, No. 4, 1005-1026 (2011). MSC: 60J22 60J28 92C45 92D25 PDFBibTeX XMLCite \textit{T. Dayar} et al., Adv. Appl. Probab. 43, No. 4, 1005--1026 (2011; Zbl 1233.60042) Full Text: DOI
Ekisheva, Svetlana; Borodovsky, Mark Uniform accuracy of the maximum likelihood estimates for probabilistic models of biological sequences. (English) Zbl 1207.62201 Methodol. Comput. Appl. Probab. 13, No. 1, 105-120 (2011). MSC: 62P10 92C42 62M05 62F10 60J20 92C40 PDFBibTeX XMLCite \textit{S. Ekisheva} and \textit{M. Borodovsky}, Methodol. Comput. Appl. Probab. 13, No. 1, 105--120 (2011; Zbl 1207.62201) Full Text: DOI Link
Foo, Jasmine; Michor, Franziska Evolution of resistance to anti-cancer therapy during general dosing schedules. (English) Zbl 1406.92294 J. Theor. Biol. 263, No. 2, 179-188 (2010). MSC: 92C50 60J85 PDFBibTeX XMLCite \textit{J. Foo} and \textit{F. Michor}, J. Theor. Biol. 263, No. 2, 179--188 (2010; Zbl 1406.92294) Full Text: DOI
Arenas, Abraham J.; González-Parra, Gilberto; Jódar, Lucas Randomness in a mathematical model for the transmission of respiratory syncytial virus (RSV). (English) Zbl 1184.92027 Math. Comput. Simul. 80, No. 5, 971-981 (2010). MSC: 92C60 34F05 65C05 PDFBibTeX XMLCite \textit{A. J. Arenas} et al., Math. Comput. Simul. 80, No. 5, 971--981 (2010; Zbl 1184.92027) Full Text: DOI
Beil, Michael; Lück, Sebastian; Fleischer, Frank; Portet, Stéphanie; Arendt, Wolfgang; Schmidt, Volker Simulating the formation of keratin filament networks by a piecewise-deterministic Markov process. (English) Zbl 1400.92160 J. Theor. Biol. 256, No. 4, 518-532 (2009). MSC: 92C37 92C40 60J20 PDFBibTeX XMLCite \textit{M. Beil} et al., J. Theor. Biol. 256, No. 4, 518--532 (2009; Zbl 1400.92160) Full Text: DOI HAL
Sandmann, Werner Sequential estimation for prescribed statistical accuracy in stochastic simulation of biological systems. (English) Zbl 1183.62136 Math. Biosci. 221, No. 1, 43-53 (2009). MSC: 62L12 92B05 62P10 65C20 PDFBibTeX XMLCite \textit{W. Sandmann}, Math. Biosci. 221, No. 1, 43--53 (2009; Zbl 1183.62136) Full Text: DOI
Kou, S. C. Stochastic modeling in nanoscale biophysics: subdiffusion within proteins. (English) Zbl 1400.62272 Ann. Appl. Stat. 2, No. 2, 501-535 (2008). MSC: 62P10 60J60 60H99 92C40 PDFBibTeX XMLCite \textit{S. C. Kou}, Ann. Appl. Stat. 2, No. 2, 501--535 (2008; Zbl 1400.62272) Full Text: DOI arXiv
Gelenbe, Erol \(G\)-networks: A unifying model for neural and queueing networks. (English) Zbl 0803.90058 Ann. Oper. Res. 48, No. 1-4, 433-461 (1994). MSC: 90B15 92B20 68T10 90C27 PDFBibTeX XMLCite \textit{E. Gelenbe}, Ann. Oper. Res. 48, No. 1--4, 433--461 (1994; Zbl 0803.90058) Full Text: DOI