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Wavelet analysis on symbolic sequences and two-fold de Bruijn sequences. (English) Zbl 1348.65185
Summary: The concept of symbolic sequences play important role in study of complex systems. In the work we are interested in ultrametric structure of the set of cyclic sequences naturally arising in theory of dynamical systems. Aimed at construction of analytic and numerical methods for investigation of clusters we introduce operator language on the space of symbolic sequences and propose an approach based on wavelet analysis for study of the cluster hierarchy. The analytic power of the approach is demonstrated by derivation of a formula for counting of two-fold de Bruijn sequences, the extension of the notion of de Bruijn sequences. Possible advantages of the developed description is also discussed in context of applied problem of construction of efficient DNA sequence assembly algorithms.
MSC:
 65T60 Numerical methods for wavelets 37N25 Dynamical systems in biology 92D20 Protein sequences, DNA sequences
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