Calvetti, Daniela; Somersalo, Erkki Large-scale statistical parameter estimation in complex systems with an application to metabolic models. (English) Zbl 1125.92020 Multiscale Model. Simul. 5, No. 4, 1333-1366 (2006). MSC: 92C30 93A30 62P10 92C40 62F15 65C05 PDFBibTeX XMLCite \textit{D. Calvetti} and \textit{E. Somersalo}, Multiscale Model. Simul. 5, No. 4, 1333--1366 (2006; Zbl 1125.92020) Full Text: DOI
Goussis, Dimitris A.; Najm, Habib N. Model reduction and physical understanding of slowly oscillating processes: the circadian cycle. (English) Zbl 1151.34045 Multiscale Model. Simul. 5, No. 4, 1297-1332 (2006). Reviewer: Jan Sieber (Portsmouth) MSC: 34E13 34E05 34E10 92C30 34C20 PDFBibTeX XMLCite \textit{D. A. Goussis} and \textit{H. N. Najm}, Multiscale Model. Simul. 5, No. 4, 1297--1332 (2006; Zbl 1151.34045) Full Text: DOI
Tanskanen, Antti J.; Winslow, Raimond L. Integrative structurally detailed model of calcium dynamics in the cardiac diad. (English) Zbl 1125.92022 Multiscale Model. Simul. 5, No. 4, 1280-1296 (2006). MSC: 92C30 92C05 35K57 35Q92 PDFBibTeX XMLCite \textit{A. J. Tanskanen} and \textit{R. L. Winslow}, Multiscale Model. Simul. 5, No. 4, 1280--1296 (2006; Zbl 1125.92022) Full Text: DOI
Locker, C. Rebecca; Harvey, Stephen C. A model for viral genome packing. (English) Zbl 1206.82006 Multiscale Model. Simul. 5, No. 4, 1264-1279 (2006). MSC: 82B05 82D60 92-08 92C05 PDFBibTeX XMLCite \textit{C. R. Locker} and \textit{S. C. Harvey}, Multiscale Model. Simul. 5, No. 4, 1264--1279 (2006; Zbl 1206.82006) Full Text: DOI
Cui, Qizhi; Tan, Robert K.-Z.; Harvey, Stephen C.; Case, David A. Low-resolution molecular dynamics simulations of the 30S ribosomal subunit. (English) Zbl 1206.82072 Multiscale Model. Simul. 5, No. 4, 1248-1263 (2006). MSC: 82C31 92E10 92C40 PDFBibTeX XMLCite \textit{Q. Cui} et al., Multiscale Model. Simul. 5, No. 4, 1248--1263 (2006; Zbl 1206.82072) Full Text: DOI
Matsumoto, Atsushi; Olson, Wilma K. Predicted effects of local conformational coupling and external restraints on the torsional properties of single DNA molecules. (English) Zbl 1125.92005 Multiscale Model. Simul. 5, No. 4, 1227-1247 (2006). MSC: 92C05 92C40 PDFBibTeX XMLCite \textit{A. Matsumoto} and \textit{W. K. Olson}, Multiscale Model. Simul. 5, No. 4, 1227--1247 (2006; Zbl 1125.92005) Full Text: DOI Link
Chodera, John D.; Swope, William C.; Pitera, Jed W.; Dill, Ken A. Long-time protein folding dynamics from short-time molecular dynamics simulations. (English) Zbl 1133.92011 Multiscale Model. Simul. 5, No. 4, 1214-1226 (2006). Reviewer: Marius Iosifescu (Bucureşti) MSC: 92C40 60J20 92C05 74A25 PDFBibTeX XMLCite \textit{J. D. Chodera} et al., Multiscale Model. Simul. 5, No. 4, 1214--1226 (2006; Zbl 1133.92011) Full Text: DOI
Zhang, Xiaoyu; Bajaj, Chandrajit L.; Kwon, Bongjune; Dolinsky, Todd J.; Nielsen, Jens E.; Baker, Nathan A. Application of new multiresolution methods for the comparison of biomolecular electrostatic properties in the absence of global structural similarity. (English) Zbl 1125.92006 Multiscale Model. Simul. 5, No. 4, 1196-1213 (2006). MSC: 92C05 92E10 92C40 78M20 35Q60 PDFBibTeX XMLCite \textit{X. Zhang} et al., Multiscale Model. Simul. 5, No. 4, 1196--1213 (2006; Zbl 1125.92006) Full Text: DOI Link
Chinchio, M.; Czaplewski, C.; Ołdziej, S.; Scheraga, H. A. A hierarchical multiscale approach to protein structure prediction: production of low-resolution packing arrangements of helices and refinement of the best models with a united-residue force field. (English) Zbl 1125.92004 Multiscale Model. Simul. 5, No. 4, 1175-1195 (2006). MSC: 92C05 92C40 65C05 92-08 PDFBibTeX XMLCite \textit{M. Chinchio} et al., Multiscale Model. Simul. 5, No. 4, 1175--1195 (2006; Zbl 1125.92004) Full Text: DOI
Fyta, Maria G.; Melchionna, Simone; Kaxiras, Efthimios; Succi, Sauro Multiscale coupling of molecular dynamics and hydrodynamics: Application to DNA translocation through a nanopore. (English) Zbl 1132.68810 Multiscale Model. Simul. 5, No. 4, 1156-1173 (2006). MSC: 68U20 92-08 92C05 PDFBibTeX XMLCite \textit{M. G. Fyta} et al., Multiscale Model. Simul. 5, No. 4, 1156--1173 (2006; Zbl 1132.68810) Full Text: DOI arXiv Link
Gu, Y. T.; Zhang, L. C. A concurrent multiscale method based on the meshfree method and molecular dynamics analysis. (English) Zbl 1220.65177 Multiscale Model. Simul. 5, No. 4, 1128-1155 (2006). MSC: 65P10 65Z05 68Q25 74S30 74H15 PDFBibTeX XMLCite \textit{Y. T. Gu} and \textit{L. C. Zhang}, Multiscale Model. Simul. 5, No. 4, 1128--1155 (2006; Zbl 1220.65177) Full Text: DOI Link
Hou, Thomas Y.; Westhead, Andrew; Yang, Danping A framework for modeling subgrid effects for two-phase flows in porous media. (English) Zbl 1127.76064 Multiscale Model. Simul. 5, No. 4, 1087-1127 (2006). MSC: 76S05 76T10 76M50 PDFBibTeX XMLCite \textit{T. Y. Hou} et al., Multiscale Model. Simul. 5, No. 4, 1087--1127 (2006; Zbl 1127.76064) Full Text: DOI
Jin, Shi; Novak, Kyle A. A semiclassical transport model for thin quantum barriers. (English) Zbl 1130.65087 Multiscale Model. Simul. 5, No. 4, 1063-1086 (2006). Reviewer: Marius Ghergu (Dublin) MSC: 65M06 65Z05 81Q20 81S30 81T80 35Q55 81Q05 PDFBibTeX XMLCite \textit{S. Jin} and \textit{K. A. Novak}, Multiscale Model. Simul. 5, No. 4, 1063--1086 (2006; Zbl 1130.65087) Full Text: DOI
Goel, Pranay; Sneyd, James; Friedman, Avner Homogenization of the cell cytoplasm: the calcium bidomain equations. (English) Zbl 1128.35303 Multiscale Model. Simul. 5, No. 4, 1045-1062 (2006). MSC: 35B27 92B05 PDFBibTeX XMLCite \textit{P. Goel} et al., Multiscale Model. Simul. 5, No. 4, 1045--1062 (2006; Zbl 1128.35303) Full Text: DOI Link