Yang, Ying; Tang, Ming; Liu, Chun; Lu, Benzhuo; Zhong, Liuqiang Superconvergent gradient recovery for nonlinear Poisson-Nernst-Planck equations with applications to the ion channel problem. (English) Zbl 1465.65148 Adv. Comput. Math. 46, No. 6, Paper No. 78, 34 p. (2020). MSC: 65N30 65N12 65N15 78A57 92C40 35Q60 PDF BibTeX XML Cite \textit{Y. Yang} et al., Adv. Comput. Math. 46, No. 6, Paper No. 78, 34 p. (2020; Zbl 1465.65148) Full Text: DOI OpenURL
Deng, Weishan; Xu, Jin; Zhao, Shan On developing stable finite element methods for pseudo-time simulation of biomolecular electrostatics. (English) Zbl 1383.78036 J. Comput. Appl. Math. 330, 456-474 (2018). Reviewer: Jichun Li (Las Vegas) MSC: 78M10 78A30 92C40 65N50 35Q20 35Q60 35B65 65M06 65M12 78A70 PDF BibTeX XML Cite \textit{W. Deng} et al., J. Comput. Appl. Math. 330, 456--474 (2018; Zbl 1383.78036) Full Text: DOI OpenURL
Mu, Lin; Xia, Kelin; Wei, Guowei Geometric and electrostatic modeling using molecular rigidity functions. (English) Zbl 1349.92031 J. Comput. Appl. Math. 313, 18-37 (2017). MSC: 92C05 92C40 81V10 78A30 PDF BibTeX XML Cite \textit{L. Mu} et al., J. Comput. Appl. Math. 313, 18--37 (2017; Zbl 1349.92031) Full Text: DOI OpenURL
Qiao, Yu; Liu, Xuejiao; Chen, Minxin; Lu, Benzhuo A local approximation of fundamental measure theory incorporated into three dimensional Poisson-Nernst-Planck equations to account for hard sphere repulsion among ions. (English) Zbl 1345.35113 J. Stat. Phys. 163, No. 1, 156-174 (2016). Reviewer: Eugene Postnikov (Kursk) MSC: 35Q82 78A57 82B80 PDF BibTeX XML Cite \textit{Y. Qiao} et al., J. Stat. Phys. 163, No. 1, 156--174 (2016; Zbl 1345.35113) Full Text: DOI arXiv OpenURL
Zhang, Bo; Peng, Bo; Huang, Jingfang; Pitsianis, Nikos P.; Sun, Xiaobai; Lu, Benzhuo Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy. (English) Zbl 1344.78004 Comput. Phys. Commun. 190, 173-181 (2015). MSC: 78-04 78M16 78A70 65Y05 PDF BibTeX XML Cite \textit{B. Zhang} et al., Comput. Phys. Commun. 190, 173--181 (2015; Zbl 1344.78004) Full Text: DOI OpenURL
Geng, Weihua; Krasny, Robert A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules. (English) Zbl 1349.78084 J. Comput. Phys. 247, 62-78 (2013). MSC: 78M15 65N38 78A30 92C30 PDF BibTeX XML Cite \textit{W. Geng} and \textit{R. Krasny}, J. Comput. Phys. 247, 62--78 (2013; Zbl 1349.78084) Full Text: DOI OpenURL
Geng, Weihua; Jacob, Ferosh A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver. (English) Zbl 1310.78017 Comput. Phys. Commun. 184, No. 6, 1490-1496 (2013). MSC: 78M15 78A30 78-04 PDF BibTeX XML Cite \textit{W. Geng} and \textit{F. Jacob}, Comput. Phys. Commun. 184, No. 6, 1490--1496 (2013; Zbl 1310.78017) Full Text: DOI arXiv OpenURL