Fu, Jing; Gan, Zecheng Harmonic surface mapping algorithm for electrostatic potentials in an atomistic/continuum hybrid model for electrolyte solutions. (English) Zbl 1477.31021 Commun. Comput. Phys. 29, No. 2, 571-587 (2021). MSC: 31B15 65M80 78A30 PDF BibTeX XML Cite \textit{J. Fu} and \textit{Z. Gan}, Commun. Comput. Phys. 29, No. 2, 571--587 (2021; Zbl 1477.31021) Full Text: DOI arXiv OpenURL
Krasny, Robert; Wang, Lei A treecode based on barycentric Hermite interpolation for electrostatic particle interactions. (English) Zbl 1439.78003 Comput. Math. Biophys. 7, No. 1, 73-84 (2019). MSC: 78A30 78A35 65D05 65Z05 78A99 PDF BibTeX XML Cite \textit{R. Krasny} and \textit{L. Wang}, Comput. Math. Biophys. 7, No. 1, 73--84 (2019; Zbl 1439.78003) Full Text: DOI OpenURL
Zhong, Yimin; Ren, Kui; Tsai, Richard An implicit boundary integral method for computing electric potential of macromolecules in solvent. (English) Zbl 1383.78014 J. Comput. Phys. 359, 199-215 (2018). MSC: 78A30 78M15 78M16 35J05 92C40 PDF BibTeX XML Cite \textit{Y. Zhong} et al., J. Comput. Phys. 359, 199--215 (2018; Zbl 1383.78014) Full Text: DOI arXiv OpenURL
Deng, Weishan; Xu, Jin; Zhao, Shan On developing stable finite element methods for pseudo-time simulation of biomolecular electrostatics. (English) Zbl 1383.78036 J. Comput. Appl. Math. 330, 456-474 (2018). Reviewer: Jichun Li (Las Vegas) MSC: 78M10 78A30 92C40 65N50 35Q20 35Q60 35B65 65M06 65M12 78A70 PDF BibTeX XML Cite \textit{W. Deng} et al., J. Comput. Appl. Math. 330, 456--474 (2018; Zbl 1383.78036) Full Text: DOI OpenURL
Geng, Weihua; Zhao, Shan A two-component matched interface and boundary (MIB) regularization for charge singularity in implicit solvation. (English) Zbl 1375.78008 J. Comput. Phys. 351, 25-39 (2017). MSC: 78A30 92C05 78M10 PDF BibTeX XML Cite \textit{W. Geng} and \textit{S. Zhao}, J. Comput. Phys. 351, 25--39 (2017; Zbl 1375.78008) Full Text: DOI OpenURL
Cheng, Yingda; Christlieb, Andrew J.; Guo, Wei; Ong, Benjamin An asymptotic preserving Maxwell solver resulting in the Darwin limit of electrodynamics. (English) Zbl 1372.78023 J. Sci. Comput. 71, No. 3, 959-993 (2017). MSC: 78M25 78A25 78M35 35C20 65M20 78M20 65D30 PDF BibTeX XML Cite \textit{Y. Cheng} et al., J. Sci. Comput. 71, No. 3, 959--993 (2017; Zbl 1372.78023) Full Text: DOI arXiv OpenURL
Cooper, Christopher D.; Barba, Lorena A. Poisson-Boltzmann model for protein-surface electrostatic interactions and grid-convergence study using the PyGBe code. (English) Zbl 1348.92008 Comput. Phys. Commun. 202, 23-32 (2016). MSC: 92-08 92C05 78A70 78A30 78M15 PDF BibTeX XML Cite \textit{C. D. Cooper} and \textit{L. A. Barba}, Comput. Phys. Commun. 202, 23--32 (2016; Zbl 1348.92008) Full Text: DOI arXiv OpenURL
Zhang, Bo; Peng, Bo; Huang, Jingfang; Pitsianis, Nikos P.; Sun, Xiaobai; Lu, Benzhuo Parallel AFMPB solver with automatic surface meshing for calculation of molecular solvation free energy. (English) Zbl 1344.78004 Comput. Phys. Commun. 190, 173-181 (2015). MSC: 78-04 78M16 78A70 65Y05 PDF BibTeX XML Cite \textit{B. Zhang} et al., Comput. Phys. Commun. 190, 173--181 (2015; Zbl 1344.78004) Full Text: DOI OpenURL
Cooper, Christopher D.; Bardhan, Jaydeep P.; Barba, L. A. A biomolecular electrostatics solver using python, GPUs and boundary elements that can handle solvent-filled cavities and stern layers. (English) Zbl 1360.78047 Comput. Phys. Commun. 185, No. 3, 720-729 (2014). MSC: 78M15 78A70 78A30 PDF BibTeX XML Cite \textit{C. D. Cooper} et al., Comput. Phys. Commun. 185, No. 3, 720--729 (2014; Zbl 1360.78047) Full Text: DOI arXiv Link OpenURL
Xie, Dexuan New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics. (English) Zbl 1349.78077 J. Comput. Phys. 275, 294-309 (2014). MSC: 78M10 78A30 65N30 92C40 PDF BibTeX XML Cite \textit{D. Xie}, J. Comput. Phys. 275, 294--309 (2014; Zbl 1349.78077) Full Text: DOI OpenURL
Gan, Zecheng; Xu, Zhenli Efficient implementation of the Barnes-Hut octree algorithm for Monte Carlo simulations of charged systems. (English) Zbl 1321.78006 Sci. China, Math. 57, No. 7, 1331-1340 (2014). Reviewer: Farruh Mukhamedov (Kuantan) MSC: 78A30 78M31 81V70 05C85 65C05 PDF BibTeX XML Cite \textit{Z. Gan} and \textit{Z. Xu}, Sci. China, Math. 57, No. 7, 1331--1340 (2014; Zbl 1321.78006) Full Text: DOI arXiv OpenURL
Geng, Weihua; Krasny, Robert A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules. (English) Zbl 1349.78084 J. Comput. Phys. 247, 62-78 (2013). MSC: 78M15 65N38 78A30 92C30 PDF BibTeX XML Cite \textit{W. Geng} and \textit{R. Krasny}, J. Comput. Phys. 247, 62--78 (2013; Zbl 1349.78084) Full Text: DOI OpenURL
Geng, Weihua; Jacob, Ferosh A GPU-accelerated direct-sum boundary integral Poisson-Boltzmann solver. (English) Zbl 1310.78017 Comput. Phys. Commun. 184, No. 6, 1490-1496 (2013). MSC: 78M15 78A30 78-04 PDF BibTeX XML Cite \textit{W. Geng} and \textit{F. Jacob}, Comput. Phys. Commun. 184, No. 6, 1490--1496 (2013; Zbl 1310.78017) Full Text: DOI arXiv OpenURL